/usr/share/avogadro/fragments/coordination/4-planar.cml is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | <molecule>
<atomArray>
<atom id="a1" elementType="Pt" x3="-0.122791" y3="0.320851" z3="-0.100248"/>
<atom id="a2" elementType="Cl" x3="-2.300961" y3="1.073882" z3="-0.598381"/>
<atom id="a3" elementType="Cl" x3="2.055379" y3="-0.432180" z3="0.397885"/>
<atom id="a4" elementType="Cl" x3="0.776573" y3="2.014133" z3="-1.473123"/>
<atom id="a5" elementType="Cl" x3="-1.022155" y3="-1.372432" z3="1.272628"/>
</atomArray>
<bondArray>
<bond atomRefs2=" a1 a2" order=" 1"/>
<bond atomRefs2=" a1 a3" order=" 1"/>
<bond atomRefs2=" a1 a4" order=" 1"/>
<bond atomRefs2=" a1 a5" order=" 1"/>
</bondArray>
</molecule>
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