/usr/share/avogadro/builder/amino/l-pyl.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | N 0.000000 0.000000 0.000000 0 0 0 -0.245286 N
C 1.463765 0.000000 0.000000 1 0 0 0.087661 CA
C 1.542578 106.300047 0.000000 2 1 0 0.217713 C
O 1.233129 122.712481 354.921440 3 2 1 -0.287208 O
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C 1.532763 112.298313 218.169904 5 2 1 -0.049780
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C 1.528803 112.482071 181.263586 7 6 5 0.011637
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C 1.370964 126.258065 89.170460 9 8 7 0.231886
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H 1.015951 116.659895 13.870656 1 2 3 0.141360
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