/usr/share/avogadro/builder/amino/l-phe.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | N 0.000000 0.000000 0.000000 0 0 0 -0.244958 N
C 1.461709 0.000000 0.000000 1 0 0 0.091600 CA
C 1.537853 106.638500 0.000000 2 1 0 0.218041 C
O 1.230661 122.976863 340.487290 3 2 1 -0.287197 O
C 1.537607 111.283301 238.785057 2 1 3 -0.003643 CB
C 1.511324 113.232887 201.308643 5 2 1 -0.045419 CG
C 1.401126 120.927051 256.287062 6 5 2 -0.058511 CD2
C 1.395615 120.346144 178.830399 7 6 5 -0.061501 CE2
C 1.393841 120.096714 0.450729 8 7 6 -0.061742 CZ
C 1.393512 119.981312 359.997249 9 8 7 -0.061501 CE1
C 1.394960 120.040389 359.688782 10 9 8 -0.058511 CD1
H 1.016627 117.346698 18.039087 1 2 3 0.141371 H
H 1.096951 107.420485 116.250431 2 1 3 0.056017 HA
H 1.098185 110.299900 77.823589 5 2 1 0.033301 HB1
H 1.098229 110.518262 321.897172 5 2 1 0.033301 HB2
H 1.088190 120.513449 358.949434 7 6 5 0.062030 HD2
H 1.087119 119.992780 179.998527 8 7 6 0.061766 HE2
H 1.086988 120.061077 179.458719 9 8 7 0.061758 HZ
H 1.087166 120.075511 179.313896 10 9 8 0.061766 HE1
H 1.089850 119.303202 179.689743 11 10 9 0.062030 HD1
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