/usr/share/avogadro/builder/amino/l-ala.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 | N 0.000000 0.000000 0.000000 0 0 0 -0.245562 N
C 1.455745 0.000000 0.000000 1 0 0 0.084861 CA
C 1.537725 107.969264 0.000000 2 1 0 0.217436 C
O 1.229748 123.258070 350.442981 3 2 1 -0.287218 O
H 1.016440 119.145476 5.903920 1 2 3 0.141350 HN
H 1.096144 108.251210 117.229845 2 1 3 0.055413 HA
C 1.524187 111.304862 238.310204 2 1 3 -0.041085 CB
H 1.094860 111.235435 301.463986 7 2 1 0.024935 1HB
H 1.095760 111.034005 61.334934 7 2 1 0.024935 2HB
H 1.095143 111.286059 181.153334 7 2 1 0.024935 3HB
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