This file is indexed.

/usr/share/avogadro/builder/amino/d-met.zmat is in avogadro-data 1.0.3-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.245259  N 
C    1.476314    0.000000    0.000000     1   0   0    0.088400  CA
C    1.536321  111.959055    0.000000     2   1   0    0.217740  C 
O    1.207290  129.335522   22.566012     3   2   1   -0.287208  O 
C    1.545410  111.051018  120.858787     2   1   3   -0.019936  CB
H    1.112875  109.081161  188.744066     5   2   1    0.029282  CG
H    1.109523  110.074064  304.526581     5   2   1    0.029282  SD
C    1.520821  110.746909   67.140763     5   2   1   -0.004715  CE
H    1.108268  111.339421  301.579960     8   5   2    0.037679  HA 
H    1.109169  111.604395   59.933337     8   5   2    0.037679  HB1
S    1.815430  110.087744  177.702427     8   5   2   -0.164064  HB2
C    1.805813  103.348291   79.652286    11   8   5   -0.018102  HG1
H    1.094426  111.887024  293.595783    12  11   8    0.034049  HG2
H    1.095178  112.021430   56.237455    12  11   8    0.034049  HE1
H    1.098832  107.705692  174.813609    12  11   8    0.034049  HE2
H    1.127018  108.281722  240.973376     2   1   3    0.055716  HE3
H    1.017339  111.724155  297.931003     1   2   3    0.141360  H