/usr/share/avogadro/builder/amino/d-glu.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | N 0.000000 0.000000 0.000000 0 0 0 -0.245273 N
C 1.477024 0.000000 0.000000 1 0 0 0.088159 CA
C 1.536826 111.695597 0.000000 2 1 0 0.217726 C
O 1.206904 128.790757 12.750369 3 2 1 -0.287208 O
C 1.541612 110.772447 121.587474 2 1 3 -0.018906 CB
H 1.112210 109.412033 184.885564 5 2 1 0.029010 HB1
H 1.111283 110.941475 301.026949 5 2 1 0.029010 HB2
C 1.529427 110.686942 63.086947 5 2 1 0.046636 CG
H 1.119120 110.319087 304.866524 8 5 2 0.037803 HG1
H 1.112777 111.378042 59.842726 8 5 2 0.037803 HG2
C 1.496554 111.351359 183.070195 8 5 2 0.304756 CD
O 1.207671 130.993422 4.365832 11 8 5 -0.251021 OE2
O 1.379438 109.400185 184.094211 11 8 5 -0.480610 OE1
H 0.993887 112.868881 180.581161 13 11 8 0.295051 HE1
H 1.127587 108.402885 241.645385 2 1 3 0.055702 H
H 1.018516 111.484062 299.931481 1 2 3 0.141360 HA
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