This package is 737.6 KB.
It is available at http://ftp.debian.org/debian/pool/main/t/tophat/tophat_2.1.1+dfsg-2+b2_amd64.deb
.
View its full control file here:
debian/control.
fast splice junction mapper for RNA-Seq reads
This package depends on:
libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.23), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, bowtie2 | bowtie.
This package does not recommend any other package.
This package suggests:
cufflinks.
This package does not conflict with any other package.
tophat 2.1.1+dfsg-2+b2 is in debian - stretch / main. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/bam2fastx
|
application/x-sharedlib | root:root | 0o755 | 123.8 KB |
/usr/bin/bam_merge
|
application/x-sharedlib | root:root | 0o755 | 158.0 KB |
/usr/bin/bed_to_juncs
|
text/x-python | root:root | 0o755 | 1.9 KB |
/usr/bin/contig_to_chr_coords
|
text/x-python | root:root | 0o755 | 4.5 KB |
/usr/bin/fix_map_ordering
|
application/x-sharedlib | root:root | 0o755 | 158.0 KB |
/usr/bin/gtf_juncs
|
application/x-sharedlib | root:root | 0o755 | 242.1 KB |
/usr/bin/gtf_to_fasta
|
application/x-sharedlib | root:root | 0o755 | 262.1 KB |
/usr/bin/juncs_db
|
application/x-sharedlib | root:root | 0o755 | 182.1 KB |
/usr/bin/long_spanning_reads
|
application/x-sharedlib | root:root | 0o755 | 478.1 KB |
/usr/bin/map2gtf
|
application/x-sharedlib | root:root | 0o755 | 186.1 KB |
/usr/bin/prep_reads
|
application/x-sharedlib | root:root | 0o755 | 218.7 KB |
/usr/bin/sam_juncs
|
application/x-sharedlib | root:root | 0o755 | 274.1 KB |
/usr/bin/samtools_0.1.18
|
application/x-sharedlib | root:root | 0o755 | 349.8 KB |
/usr/bin/segment_juncs
|
application/x-sharedlib | root:root | 0o755 | 530.4 KB |
/usr/bin/sra_to_solid
|
text/x-python | root:root | 0o755 | 716 bytes |
/usr/bin/tophat
|
text/x-python | root:root | 0o755 | 167.7 KB |
/usr/bin/tophat2
|
text/x-shellscript | root:root | 0o755 | 166 bytes |
/usr/bin/tophat-fusion-post
|
text/x-python | root:root | 0o755 | 115.6 KB |
/usr/bin/tophat_reports
|
application/x-sharedlib | root:root | 0o755 | 538.1 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/changelog.Debian.amd64.gz
|
application/gzip | root:root | 0o644 | 227 bytes |
/usr/share/doc/tophat/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 2.8 KB |
/usr/share/doc/tophat/copyright
|
text/plain | root:root | 0o644 | 3.9 KB |
/usr/share/doc/tophat/README
|
text/plain | root:root | 0o644 | 789 bytes |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/bam2fastx.1.gz
|
application/gzip | root:root | 0o644 | 1.0 KB |
/usr/share/man/man1/bed_to_juncs.1.gz
|
application/gzip | root:root | 0o644 | 316 bytes |
/usr/share/man/man1/contig_to_chr_coords.1.gz
|
application/gzip | root:root | 0o644 | 348 bytes |
/usr/share/man/man1/tophat.1.gz
|
application/gzip | root:root | 0o644 | 1.9 KB |