This file is indexed.

/usr/lib/R/site-library/Luminescence/INDEX is in r-cran-luminescence 0.6.4-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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Analyse_SAR.OSLdata     Analyse SAR CW-OSL measurements.
BaseDataSet.CosmicDoseRate
                        Base data set for cosmic dose rate calculation
CW2pHMi                 Transform a CW-OSL curve into a pHM-OSL curve
                        via interpolation under hyperbolic modulation
                        conditions
CW2pLM                  Transform a CW-OSL curve into a pLM-OSL curve
CW2pLMi                 Transform a CW-OSL curve into a pLM-OSL curve
                        via interpolation under linear modulation
                        conditions
CW2pPMi                 Transform a CW-OSL curve into a pPM-OSL curve
                        via interpolation under parabolic modulation
                        conditions
ExampleData.BINfileData
                        Example data from a SAR OSL and SAR TL
                        measurement for the package Luminescence
ExampleData.CW_OSL_Curve
                        Example CW-OSL curve data for the package
                        Luminescence
ExampleData.DeValues    Example De data sets for the package
                        Luminescence
ExampleData.FittingLM   Example data for fit_LMCurve() in the package
                        Luminescence
ExampleData.LxTxData    Example Lx/Tx data from CW-OSL SAR measurement
ExampleData.LxTxOSLData
                        Example Lx and Tx curve data from an artificial
                        OSL measurement
ExampleData.RLum.Analysis
                        Example data as 'RLum.Analysis' objects
ExampleData.RLum.Data.Image
                        Example data as 'RLum.Data.Image' objects
ExampleData.XSYG        Example data for a SAR OSL measurement and a TL
                        spectrum using a lexsyg reader
Luminescence-package    Comprehensive Luminescence Dating Data Analysis
RLum-class              Class '"RLum"'
RLum.Analysis-class     Class '"RLum.Analysis"'
RLum.Data-class         Class '"RLum.Data"'
RLum.Data.Curve-class   Class '"RLum.Data.Curve"'
RLum.Data.Image-class   Class '"RLum.Data.Image"'
RLum.Data.Spectrum-class
                        Class '"RLum.Data.Spectrum"'
RLum.Results-class      Class '"RLum.Results"'
Risoe.BINfileData-class
                        Class '"Risoe.BINfileData"'
Risoe.BINfileData2RLum.Analysis
                        Convert Risoe.BINfileData object to an
                        RLum.Analysis object
Second2Gray             Converting equivalent dose values from seconds
                        (s) to gray (Gy)
analyse_IRSAR.RF        Analyse IRSAR RF measurements
analyse_SAR.CWOSL       Analyse SAR CW-OSL measurements
analyse_SAR.TL          Analyse SAR TL measurements
analyse_baSAR           Bayesian models (baSAR) applied on luminescence
                        data
analyse_pIRIRSequence   Analyse post-IR IRSL sequences
app_RLum                Run Luminescence shiny apps (wrapper)
apply_CosmicRayRemoval
                        Function to remove cosmic rays from an
                        RLum.Data.Spectrum S4 class object
apply_EfficiencyCorrection
                        Function to apply spectral efficiency
                        correction to RLum.Data.Spectrum S4 class
                        objects
as                      as() - RLum-object coercion
bin_RLum.Data           Channel binning - method dispatchter
calc_AliquotSize        Estimate the amount of grains on an aliquot
calc_CentralDose        Apply the central age model (CAM) after
                        Galbraith et al. (1999) to a given De
                        distribution
calc_CommonDose         Apply the (un-)logged common age model after
                        Galbraith et al. (1999) to a given De
                        distribution
calc_CosmicDoseRate     Calculate the cosmic dose rate
calc_FadingCorr         Apply a fading correction according to Huntley
                        & Lamothe (2001) for a given g-value and a
                        given tc
calc_FastRatio          Calculate the Fast Ratio for CW-OSL curves
calc_FiniteMixture      Apply the finite mixture model (FMM) after
                        Galbraith (2005) to a given De distribution
calc_FuchsLang2001      Apply the model after Fuchs & Lang (2001) to a
                        given De distribution.
calc_HomogeneityTest    Apply a simple homogeneity test after Galbraith
                        (2003)
calc_IEU                Apply the internal-external-uncertainty (IEU)
                        model after Thomsen et al. (2007) to a given De
                        distribution
calc_MaxDose            Apply the maximum age model to a given De
                        distribution
calc_MinDose            Apply the (un-)logged minimum age model (MAM)
                        after Galbraith et al. (1999) to a given De
                        distribution
calc_OSLLxTxRatio       Calculate Lx/Tx ratio for CW-OSL curves
calc_SourceDoseRate     Calculation of the source dose rate via the
                        date of measurement
calc_Statistics         Function to calculate statistic measures
calc_TLLxTxRatio        Calculate the Lx/Tx ratio for a given set of TL
                        curves [beta version]
calc_ThermalLifetime    Calculates the Thermal Lifetime using the
                        Arrhenius equation
calc_gSGC               Calculate De value based on the gSGC by Li et
                        al., 2015
extract_IrradiationTimes
                        Extract irradiation times from an XSYG file
fit_CWCurve             Nonlinear Least Squares Fit for CW-OSL curves
                        [beta version]
fit_LMCurve             Nonlinear Least Squares Fit for LM-OSL curves
get_Layout              Collection of layout definitions
get_Quote               Function to return essential quotes
get_RLum                General accessor function for RLum S4 class
                        objects
get_Risoe.BINfileData   General accessor function for RLum S4 class
                        objects
get_rightAnswer         Function to get the right answer
length_RLum             General accessor function for RLum S4 class
                        objects
merge_RLum              General merge function for RLum S4 class
                        objects
merge_RLum.Analysis     Merge function for RLum.Analysis S4 class
                        objects
merge_RLum.Data.Curve   Merge function for RLum.Data.Curve S4 class
                        objects
merge_RLum.Results      Merge function for RLum.Results S4-class
                        objects
merge_Risoe.BINfileData
                        Merge Risoe.BINfileData objects or Risoe
                        BIN-files
methods_RLum            methods_RLum
model_LuminescenceSignals
                        Model Luminescence Signals (wrapper)
names_RLum              S4-names function for RLum S4 class objects
plot_AbanicoPlot        Function to create an Abanico Plot.
plot_DRTResults         Visualise dose recovery test results
plot_DetPlot            Create De(t) plot
plot_FilterCombinations
                        Plot filter combinations along with the
                        (optional) net transmission window
plot_GrowthCurve        Fit and plot a growth curve for luminescence
                        data (Lx/Tx against dose)
plot_Histogram          Plot a histogram with separate error plot
plot_KDE                Plot kernel density estimate with statistics
plot_NRt                Visualise natural/regenerated signal ratios
plot_RLum               General plot function for RLum S4 class objects
plot_RLum.Analysis      Plot function for an RLum.Analysis S4 class
                        object
plot_RLum.Data.Curve    Plot function for an RLum.Data.Curve S4 class
                        object
plot_RLum.Data.Image    Plot function for an 'RLum.Data.Image' S4 class
                        object
plot_RLum.Data.Spectrum
                        Plot function for an RLum.Data.Spectrum S4
                        class object
plot_RLum.Results       Plot function for an RLum.Results S4 class
                        object
plot_RadialPlot         Function to create a Radial Plot
plot_Risoe.BINfileData
                        Plot single luminescence curves from a BIN file
                        object
plot_ViolinPlot         Create a violin plot
read_BIN2R              Import Risoe BIN-file into R
read_Daybreak2R         Import Daybreak ASCII dato into R
read_SPE2R              Import Princeton Intruments (TM) SPE-file into
                        R
read_XSYG2R             Import XSYG files to R
replicate_RLum          General replication function for RLum S4 class
                        objects
report_RLum             Create a HTML report for (RLum) objects
sTeve                   sTeve - sophisticated tool for efficient data
                        validation and evaluation
set_RLum                General set function for RLum S4 class objects
set_Risoe.BINfileData   General accessor function for RLum S4 class
                        objects
structure_RLum          General structure function for RLum S4 class
                        objects
template_DRAC           Create a DRAC input data template (v1.1)
tune_Data               Tune data for experimental purpose
use_DRAC                Use DRAC to calculate dose rate data
verify_SingleGrainData
                        Verify single grain data sets and check for
                        invalid grains, i.e. zero light level grains
write_R2BIN             Export Risoe.BINfileData into Risoe BIN-file