/usr/lib/R/site-library/Epi/INDEX is in r-cran-epi 2.7-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 | B.dk Births in Denmark by year and month of birth
and sex
DMconv Conversion to diabetes
DMlate The Danish National Diabetes Register.
Icens Fits a regression model to interval censored
data.
LCa.fit Fit Lee-Carter-type models for rates to
arbitrarily shaped observations of rates in a
Lexis diagram.
Lexis Create a Lexis object
Lexis.diagram Plot a Lexis diagram
Lexis.lines Draw life lines in a Lexis diagram.
Life.lines Compute dates/ages for life lines in a Lexis
diagram
M.dk Mortality in Denmark 1974 ff.
N.dk Population size in Denmark
N2Y Create risk time ("Person-Years") in Lexis
triangles from population count data.
NArray Set up an array of NAs, solely from the list of
dimnames
Ns Natural splines - (cubic splines linear beyond
outermost knots) with convenient specification
of knots and possibility of centering,
detrending and clamping.
ROC Function to compute and draw ROC-curves.
Relevel Reorder and combine levels of a factor
S.typh Salmonella Typhimurium outbreak 1996 in
Denmark.
Termplot A wrapper for 'termplot' that optionally (but
by default) exponentiates terms, and plot them
on a common log-scale. Also scales x-axes to
the same physical scale.
Y.dk Population risk time in Denmark
apc.LCa Fit Age-Period-Cohort models and Lee-Carter
models with effects modeled by natural splines.
apc.fit Fit an Age-Period-Cohort model to tabular data.
apc.frame Produce an empty frame for display of
parameter-estimates from
Age-Period-Cohort-models.
apc.lines Plot APC-estimates in an APC-frame.
bdendo A case-control study of endometrial cancer
bdendo11 A 1:1 subset of the endometrial cancer
case-control study
births Births in a London Hospital
blcaIT Bladder cancer mortality in Italian males
boxes.MS Draw boxes and arrows for illustration of
multistate models.
brv Bereavement in an elderly cohort
cal.yr Functions to convert character, factor and
various date objects into a number, and vice
versa.
cbind.Lexis Combining a Lexis objects with data frames or
other Lexis objects
ccwc Generate a nested case-control study
ci.cum Compute cumulative sum of estimates.
ci.lin Compute linear functions of parameters with
standard errors and confidence limits
ci.pd Compute confidence limits for a difference of
two independent proportions.
clogistic Conditional logistic regression
contr.cum Contrast matrices
count Special functions for use in stat.table
crr.Lexis Fit a competing risks regression model
(Fine-Gray model) using a Lexis object)
cutLexis Cut follow-up at a specified date for each
person.
detrend Projection of a model matrix on to the
orthogonal complement of a trend.
diet Diet and heart data
effx Function to calculate effects
effx.match Function to calculate effects for individually
matched case-control studies
entry Time series methods for Lexis objects
erl Compute survival functions from rates and
expected residual lifetime in an illness-death
model as well as years of life lost to disease.
ewrates Rates of lung and nasal cancer mortality, and
total mortality.
expand.data Function to expand data for regression analysis
of interval censored data.
fit.add Fit an addive excess risk model to interval
censored data.
fit.baseline Fit a piecewise contsnt intesity model for
interval censored data.
fit.mult Fits a multiplicative relative risk model to
interval censored data.
float Calculate floated variances
ftrend Fit a floating trend to a factor in generalized
linear model
gen.exp Generate covariates for drug-exposure follow-up
from drug purchase records.
gmortDK Population mortality rates for Denmark in
5-years age groups.
hivDK hivDK: seroconversion in a cohort of Danish men
lep An unmatched case-control study of leprosy
incidence
lls Functions to manage and explore the workspace
lungDK Male lung cancer incidence in Denmark
merge.Lexis Merge a Lexis object with a data frame
merge.data.frame Merge data frame with a Lexis object
mh Mantel-Haenszel analyses of cohort and
case-control studies
mortDK Population mortality rates for Denmark in
1-year age-classes.
msdata Create a data structures suitable for use with
packages mstate, etm.
ncut Function to group a variable in intervals.
nice Nice breakpoints
nickel A Cohort of Nickel Smelters in South Wales
occup A small occupational cohort
pc.lines Plot period and cohort effects in an APC-frame.
pctab Create percentages in a table
plot.Lexis Lexis diagrams
plot.apc Plot the estimates from a fitted
Age-Period-Cohort model
plotEst Plot estimates with confidence limits (forest
plot)
plotevent Plot Equivalence Classes
projection.ip Projection of columns of a matrix.
rateplot Functions to plot rates from a table classified
by age and calendar time (period)
rm.tr Remove transitions from a Lexis object.
simLexis Simulate a Lexis object representing follow-up
in a multistate model.
splitLexis Split follow-up time in a Lexis object
stack.Lexis Functions to facilitate analysis of multistate
models.
stat.table Tables of summary statistics
subset.Lexis Subsetting Lexis (and stacked.Lexis) objects
summary.Lexis Summarize transitions and risk time from a
Lexis object
testisDK Testis cancer incidence in Denmark, 1943-1996
thoro Thorotrast Study
timeBand Extract time band data from a split Lexis
object
timeScales The time scales of a Lexis object
transform.Lexis Transform a Lexis (or stacked.Lexis) objects
twoby2 Analysis of a two by two table
|