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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | Package: rtracklayer
Title: R interface to genome browsers and their annotation tracks
Version: 1.34.1
Author: Michael Lawrence, Vince Carey, Robert Gentleman
Depends: R (>= 3.3), methods, GenomicRanges (>= 1.21.20)
Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>=
0.9.33), IRanges (>= 2.3.7), XVector (>= 0.9.4), GenomeInfoDb
(>= 1.3.14), Biostrings (>= 2.37.1), RCurl (>= 1.4-2),
Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.5.4), tools
Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
genefilter, limma, org.Hs.eg.db, hgu133plus2.db,
BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
LinkingTo: S4Vectors, IRanges, XVector
Description: Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.
Maintainer: Michael Lawrence <michafla@gene.com>
License: Artistic-2.0 + file LICENSE
Collate: io.R web.R ranges.R trackDb.R browser.R ucsc.R readGFF.R gff.R
bed.R wig.R utils.R bigWig.R chain.R quickload.R twobit.R
fasta.R tabix.R bam.R trackTable.R index.R compression.R
test_rtracklayer_package.R ncbi.R zzz.R
biocViews: Annotation,Visualization,DataImport
NeedsCompilation: yes
Packaged: 2016-11-01 22:26:05 UTC; biocbuild
Built: R 3.3.2; x86_64-pc-linux-gnu; 'Sun, 04 Dec 2016 21:53:17 +0100'; unix
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