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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | Package: DESeq2
Type: Package
Title: Differential gene expression analysis based on the negative
binomial distribution
Version: 1.14.1
Author: Michael Love, Simon Anders, Wolfgang Huber
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution.
License: LGPL (>= 3)
VignetteBuilder: knitr
Imports: BiocGenerics (>= 0.7.5), Biobase, BiocParallel, genefilter,
methods, geneplotter, ggplot2, Hmisc, Rcpp (>= 0.11.0)
Depends: S4Vectors (>= 0.9.25), IRanges, GenomicRanges,
SummarizedExperiment (>= 1.1.6)
Suggests: testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer,
airway, IHW, tximport, tximportData, readr, pasilla (>= 0.2.10)
LinkingTo: Rcpp, RcppArmadillo
biocViews: Sequencing, ChIPSeq, RNASeq, SAGE, DifferentialExpression,
GeneExpression, Transcription
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-01 00:14:26 UTC; biocbuild
Built: R 3.3.2; x86_64-pc-linux-gnu; 'Sun, 04 Dec 2016 14:11:45 +0100'; unix
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