About

This package is 12.9 MB. It is available at http://ftp.debian.org/debian/pool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.42.1-1_amd64.deb .

View its full control file here: debian/control.

Description

GNU R string objects representing biological sequences

Relations

This package depends on: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biocgenerics (>= 0.15.6), r-bioc-s4vectors (>= 0.11.1), r-bioc-iranges (>= 2.5.27), r-bioc-xvector (>= 0.11.6), libc6 (>= 2.14).

This package does not recommend any other package.

This package suggests: r-bioc-bsgenome (>= 1.13.14), r-bioc-genomicfeatures (>= 1.3.14), r-bioc-affy (>= 1.41.3), r-cran-runit.

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-biostrings 2.42.1-1 is in debian - stretch / main. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/Biostrings/ root:root 0o755
/usr/lib/R/site-library/Biostrings/data/ root:root 0o755
/usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda application/gzip root:root 0o644 712 bytes
/usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda application/gzip root:root 0o644 635 bytes
/usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda application/gzip root:root 0o644 628 bytes
/usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda application/gzip root:root 0o644 620 bytes
/usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda application/gzip root:root 0o644 648 bytes
/usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda application/gzip root:root 0o644 4.4 KB
/usr/lib/R/site-library/Biostrings/data/PAM120.rda application/gzip root:root 0o644 673 bytes
/usr/lib/R/site-library/Biostrings/data/PAM250.rda application/gzip root:root 0o644 635 bytes
/usr/lib/R/site-library/Biostrings/data/PAM30.rda application/gzip root:root 0o644 767 bytes
/usr/lib/R/site-library/Biostrings/data/PAM40.rda application/gzip root:root 0o644 736 bytes
/usr/lib/R/site-library/Biostrings/data/PAM70.rda application/gzip root:root 0o644 740 bytes
/usr/lib/R/site-library/Biostrings/data/phiX174Phage.rda application/gzip root:root 0o644 6.3 KB
/usr/lib/R/site-library/Biostrings/data/srPhiX174.rda application/gzip root:root 0o644 36.9 KB
/usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda application/gzip root:root 0o644 64.9 KB
/usr/lib/R/site-library/Biostrings/DESCRIPTION text/plain root:root 0o644 2.4 KB
/usr/lib/R/site-library/Biostrings/doc/ root:root 0o755
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf application/pdf root:root 0o644 158.7 KB
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R text/plain root:root 0o644 3.5 KB
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw text/x-tex root:root 0o644 8.3 KB
/usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf application/pdf root:root 0o644 110.9 KB
/usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw text/x-tex root:root 0o644 9.3 KB
/usr/lib/R/site-library/Biostrings/doc/index.html text/html root:root 0o644 3.4 KB
/usr/lib/R/site-library/Biostrings/doc/matchprobes.pdf application/pdf root:root 0o644 240.0 KB
/usr/lib/R/site-library/Biostrings/doc/matchprobes.R text/plain root:root 0o644 3.6 KB
/usr/lib/R/site-library/Biostrings/doc/matchprobes.Rnw text/x-tex root:root 0o644 9.7 KB
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.pdf application/pdf root:root 0o644 153.8 KB
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R text/plain root:root 0o644 5.1 KB
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rnw text/x-tex root:root 0o644 10.3 KB
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf application/pdf root:root 0o644 281.7 KB
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.R text/plain root:root 0o644 24.6 KB
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw text/x-tex root:root 0o644 52.2 KB
/usr/lib/R/site-library/Biostrings/extdata/ root:root 0o755
/usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz application/gzip root:root 0o644 11.0 MB
/usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa text/plain root:root 0o644 169 bytes
/usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt text/plain root:root 0o644 495 bytes
/usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt text/plain root:root 0o644 667 bytes
/usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln text/plain root:root 0o644 37.0 KB
/usr/lib/R/site-library/Biostrings/extdata/Phylip.txt text/plain root:root 0o644 6.2 KB
/usr/lib/R/site-library/Biostrings/extdata/README text/plain root:root 0o644 440 bytes
/usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt text/plain root:root 0o644 31.0 KB
/usr/lib/R/site-library/Biostrings/extdata/Sc.fa text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/Biostrings/extdata/someORF.fa text/plain root:root 0o644 26.7 KB
/usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz application/gzip root:root 0o644 7.9 KB
/usr/lib/R/site-library/Biostrings/extdata/Sp.fa text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/Biostrings/help/ root:root 0o755
/usr/lib/R/site-library/Biostrings/help/aliases.rds application/gzip root:root 0o644 6.4 KB
/usr/lib/R/site-library/Biostrings/help/AnIndex text/plain root:root 0o644 39.8 KB
/usr/lib/R/site-library/Biostrings/help/Biostrings.rdb application/octet-stream root:root 0o644 380.1 KB
/usr/lib/R/site-library/Biostrings/help/Biostrings.rdx application/gzip root:root 0o644 1.7 KB
/usr/lib/R/site-library/Biostrings/help/paths.rds application/gzip root:root 0o644 758 bytes
/usr/lib/R/site-library/Biostrings/html/ root:root 0o755
/usr/lib/R/site-library/Biostrings/html/00Index.html text/html root:root 0o644 86.8 KB
/usr/lib/R/site-library/Biostrings/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Biostrings/include/ root:root 0o755
/usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h text/x-c root:root 0o644 6.1 KB
/usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h text/x-c root:root 0o644 6.5 KB
/usr/lib/R/site-library/Biostrings/include/_Biostrings_stubs.c text/x-c root:root 0o644 4.0 KB
/usr/lib/R/site-library/Biostrings/INDEX text/plain root:root 0o644 5.2 KB
/usr/lib/R/site-library/Biostrings/libs/ root:root 0o755
/usr/lib/R/site-library/Biostrings/libs/Biostrings.so application/x-sharedlib root:root 0o644 212.0 KB
/usr/lib/R/site-library/Biostrings/Meta/ root:root 0o755
/usr/lib/R/site-library/Biostrings/Meta/data.rds application/gzip root:root 0o644 320 bytes
/usr/lib/R/site-library/Biostrings/Meta/hsearch.rds application/gzip root:root 0o644 7.7 KB
/usr/lib/R/site-library/Biostrings/Meta/links.rds application/gzip root:root 0o644 6.1 KB
/usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds application/gzip root:root 0o644 2.2 KB
/usr/lib/R/site-library/Biostrings/Meta/package.rds application/gzip root:root 0o644 1.8 KB
/usr/lib/R/site-library/Biostrings/Meta/Rd.rds application/gzip root:root 0o644 7.5 KB
/usr/lib/R/site-library/Biostrings/Meta/vignette.rds application/gzip root:root 0o644 455 bytes
/usr/lib/R/site-library/Biostrings/NAMESPACE text/plain root:root 0o644 10.6 KB
/usr/lib/R/site-library/Biostrings/NEWS text/plain root:root 0o644 16.9 KB
/usr/lib/R/site-library/Biostrings/R/ root:root 0o755
/usr/lib/R/site-library/Biostrings/R/Biostrings text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/Biostrings/R/Biostrings.rdb application/octet-stream root:root 0o644 833.9 KB
/usr/lib/R/site-library/Biostrings/R/Biostrings.rdx application/gzip root:root 0o644 15.2 KB
/usr/lib/R/site-library/Biostrings/unitTests/ root:root 0o755
/usr/lib/R/site-library/Biostrings/unitTests/test_findPalindromes.R text/plain root:root 0o644 5.8 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME text/plain root:root 0o644 8.1 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_matchPDict.R text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R text/plain root:root 0o644 10.7 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_pairwiseAlignment.R text/plain root:root 0o644 10.1 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R text/plain root:root 0o644 5.3 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_XString.R text/plain root:root 0o644 1.9 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_XStringSetList.R text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/Biostrings/unitTests/test_XStringSet.R text/plain root:root 0o644 3.7 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/r-bioc-biostrings/ root:root 0o755
/usr/share/doc/r-bioc-biostrings/changelog.Debian.gz application/gzip root:root 0o644 770 bytes
/usr/share/doc/r-bioc-biostrings/changelog.gz application/gzip root:root 0o644 1.9 KB
/usr/share/doc/r-bioc-biostrings/copyright text/plain root:root 0o644 5.2 KB
/usr/share/doc/r-bioc-biostrings/README.test text/plain root:root 0o644 262 bytes
/usr/share/doc/r-bioc-biostrings/run-unit-test text/x-shellscript root:root 0o644 295 bytes