/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py is in python-cogent 1.9-9.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | #!/usr/bin/env python
__all__ = ["best_likelihood", "bootstrap", "likelihood_calculation",
"likelihood_function", "likelihood_tree", "models",
"pairwise_distance", "parameter_controller", "predicate",
"simulate", "substitution_calculation", "substitution_model",
"coevolution"]
__author__ = ""
__copyright__ = "Copyright 2007-2016, The Cogent Project"
__credits__ = ["Gavin Huttley", "Peter Maxwell", "Andrew Butterfield",
"Rob Knight", "Matthrew Wakefield", "Brett Easton",
"Edward Lang","Greg Caporaso"]
__license__ = "GPL"
__version__ = "1.9"
__maintainer__ = "Gavin Huttley"
__email__ = "gavin.huttley@anu.edu.au"
__status__ = "Production"
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