/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py is in python-cogent 1.9-9.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | #!/usr/bin/env python
from cogent.app.util import CommandLineApplication,\
CommandLineAppResult, ResultPath
from cogent.app.parameters import Parameter, FlagParameter, ValuedParameter,\
MixedParameter,Parameters, _find_synonym, is_not_None
__author__ = "Shandy Wikman"
__copyright__ = "Copyright 2007-2016, The Cogent Project"
__contributors__ = ["Shandy Wikman"]
__license__ = "GPL"
__version__ = "1.9"
__maintainer__ = "Shandy Wikman"
__email__ = "ens01svn@cs.umu.se"
__status__ = "Development"
class Contrafold(CommandLineApplication):
"""Application controler for CONTRAfold v1.0"""
_parameters = {'predict':FlagParameter(Prefix='',Name='predict',Value=True),
'train':FlagParameter(Prefix='',Name='train')}
_command = 'contrafold'
_input_handler='_input_as_string'
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