pymol 1.8.4.0+dfsg-1 / usr / share / doc / pymol / copyright

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: PyMOL
Source: https://sourceforge.net/projects/pymol/files/pymol/
Files-Excluded: */jquery.js

Files: *
Copyright: 1998-2016 Warren L. DeLano <warren@delanoscientific.com>
License: PyMOL
 The PyMOL source code is copyrighted, but you can freely use and copy
 it as long as you don't change or remove any of the copyright notices.
 .
 Permission to use, copy, modify, distribute, and distribute modified 
 versions of this software and its documentation for any purpose and 
 without fee is hereby granted, provided that the above copyright 
 notice appear in all copies and that both the copyright notice and 
 this permission notice appear in supporting documentation, and that 
 the names of Warren L. DeLano or DeLano Scientific not be used in 
 advertising or publicity pertaining to distribution of the software 
 without specific, written prior permission.
 .
 WARREN LYFORD DELANO AND DELANO SCIENTIFIC DISCLAIM ALL WARRANTIES
 WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF
 MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL WARREN LYFORD DELANO
 OR DELANO SCIENTIFIC BE LIABLE FOR ANY SPECIAL, INDIRECT OR 
 CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE 
 USE OR PERFORMANCE OF THIS SOFTWARE.
Comment: PyMOL Trademark Notice
 PyMOL(TM) is a trademark of DeLano Scientific.  Derivate software
 which contains PyMOL source code must be plainly distinguished from
 the PyMOL package distributed by DeLano Scientific in all publicity,
 advertising, and documentation.
 .
 The slogans, "Includes PyMOL(TM).", "Based on PyMOL(TM) technology.",
 "Contains PyMOL(TM) source code.", and "Built using PyMOL(TM).", may
 be used in advertising, publicity, and documentation of derivate
 software provided that the notice, "PyMOL is a trademark of DeLano
 Scientific.", is included in a footnote or at the end of the document.
 .
 All other endorsements employing the PyMOL trademark require specific,
 written prior permission.
 .
  -- Warren L. DeLano (warren@delanoscientific.com)

Files: contrib/uiuc/*
Copyright: 2006 Theoretical and Computational Biophysics Group
License: UIUC 
Comment: Note that this special instance of the VMD plugin tree source code has
 been automatically modified to work and compile within the PyMOL
 environment.  Therefore, for all uses of this code other than
 compilation of PyMOL, we urge you to refer back to the Theoretical and
 Computational Biophysics Group at the University of Illinois at
 Urbana-Champaign (http://www.ks.uiuc.edu/) for pristine copies of the
 unmodified VMD plugin tree.  Please do not rely upon our modified copy
 outside of the PyMOL context, since it may change unexpectedly.

Files: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx
Copyright: 2009 D. E. Shaw Research, LLC
License: BSD-3-clause

Files: layer1/FontTTF.h
Copyright: Fonts are (c) Bitstream. 
 DejaVu changes are in public domain. 
 Glyphs imported from Arev fonts are (c) Tavmjung Bah.
License: Bitstream_Vera
  Bitstream Vera Fonts Copyright
  ------------------------------
  .
  Copyright (c) 2003 by Bitstream, Inc. All Rights Reserved. Bitstream Vera is
  a trademark of Bitstream, Inc.
  .
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of the fonts accompanying this license ("Fonts") and associated
  documentation files (the "Font Software"), to reproduce and distribute the
  Font Software, including without limitation the rights to use, copy, merge,
  publish, distribute, and/or sell copies of the Font Software, and to permit
  persons to whom the Font Software is furnished to do so, subject to the
  following conditions:
  .
  The above copyright and trademark notices and this permission notice shall
  be included in all copies of one or more of the Font Software typefaces.
  .
  The Font Software may be modified, altered, or added to, and in particular
  the designs of glyphs or characters in the Fonts may be modified and
  additional glyphs or characters may be added to the Fonts, only if the fonts
  are renamed to names not containing either the words "Bitstream" or the word
  "Vera".
  .
  This License becomes null and void to the extent applicable to Fonts or Font
  Software that has been modified and is distributed under the "Bitstream
  Vera" names.
  .
  The Font Software may be sold as part of a larger software package but no
  copy of one or more of the Font Software typefaces may be sold by itself.
  .
  THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
  OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY,
  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT,
  TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL BITSTREAM OR THE GNOME
  FOUNDATION BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING
  ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES,
  WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF
  THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE
  FONT SOFTWARE.
  .
  Except as contained in this notice, the names of Gnome, the Gnome
  Foundation, and Bitstream Inc., shall not be used in advertising or
  otherwise to promote the sale, use or other dealings in this Font Software
  without prior written authorization from the Gnome Foundation or Bitstream
  Inc., respectively. For further information, contact: fonts at gnome dot
  org. 
  .
  Arev Fonts Copyright
  ------------------------------
  .
  Copyright (c) 2006 by Tavmjong Bah. All Rights Reserved.
  .
  Permission is hereby granted, free of charge, to any person obtaining
  a copy of the fonts accompanying this license ("Fonts") and
  associated documentation files (the "Font Software"), to reproduce
  and distribute the modifications to the Bitstream Vera Font Software,
  including without limitation the rights to use, copy, merge, publish,
  distribute, and/or sell copies of the Font Software, and to permit
  persons to whom the Font Software is furnished to do so, subject to
  the following conditions:
  .
  The above copyright and trademark notices and this permission notice
  shall be included in all copies of one or more of the Font Software
  typefaces.
  .
  The Font Software may be modified, altered, or added to, and in
  particular the designs of glyphs or characters in the Fonts may be
  modified and additional glyphs or characters may be added to the
  Fonts, only if the fonts are renamed to names not containing either
  the words "Tavmjong Bah" or the word "Arev".
  .
  This License becomes null and void to the extent applicable to Fonts
  or Font Software that has been modified and is distributed under the 
  "Tavmjong Bah Arev" names.
  .
  The Font Software may be sold as part of a larger software package but
  no copy of one or more of the Font Software typefaces may be sold by
  itself.
  .
  THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
  EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF
  MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT
  OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL
  TAVMJONG BAH BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
  INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL
  DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
  FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM
  OTHER DEALINGS IN THE FONT SOFTWARE.
  .
  Except as contained in this notice, the name of Tavmjong Bah shall not
  be used in advertising or otherwise to promote the sale, use or other
  dealings in this Font Software without prior written authorization
  from Tavmjong Bah. For further information, contact: tavmjong @ free
  . fr.

Files: layer1/FontTTF2.h
Copyright: 2003-2005, SIL International (http://scripts.sil.org/).
License: OFL

Files: layer1/FontGLUT8x13.cpp 
  layer1/FontGLUT9x15.cpp 
  layer1/FontGLUTHel12.cpp 
  layer1/FontGLUTHel18.cpp
Copyright:  Mark J. Kilgard, 1994. 
License: freely_distributable
  This program is freely distributable without licensing fees 
  and is provided without guarantee or warrantee expressed or 
  implied. This program is -not- in the public domain. 
  .
  Modifications by Warren L. DeLano, 2004.  

Files: modules/cealign/src/tnt/*
Copyright: Mathematical and Computational Sciences Division
           National Institute of Technology,
           Gaithersburg, MD USA
License: public_domain
 This software was developed at the National Institute of Standards and
 Technology (NIST) by employees of the Federal Government in the course
 of their official duties. Pursuant to title 17 Section 105 of the
 United States Code, this software is not subject to copyright protection
 and is in the public domain.  NIST assumes no responsibility whatsoever for
 its use by other parties, and makes no guarantees, expressed or implied,
 about its quality, reliability, or any other characteristic.

Files: ov/src/OVRandom.cpp
Copyright: 1997 - 2002 Makoto Matsumoto <matumoto@math.keio.ac.jp>,
                       Takuji Nishimura
License: BSD-3-clause

Files: debian/*
Copyright: 2002-2015 Michael Banck <mbanck@debian.org> on
License: GPL-2+

Files: debian/pymolRef.tex
Copyright: 2007-2009 R. Bryn Fenwick
License: GPL-2+

License: GPL-2+
    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.
 .
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 .
 On Debian systems, the GNU General Public license version 2 can be found in
 the file `/usr/share/common-licenses/GPL-2'.

License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are
 met:
 .
  * Redistributions of source code must retain the above copyright
    notice, this list of conditions, and the following disclaimer.
  * Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions, and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
  * The names of its contributors may not be used to endorse or promote 
    products derived from this software without specific prior written 
    permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
 OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
License: UIUC
 UIUC Open Source License
 .
 Permission is hereby granted, free of charge, to any person obtaining a copy of
 this software and associated documentation files (the Software), to deal with 
 the Software without restriction, including without limitation the rights to 
 use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies 
 of the Software, and to permit persons to whom the Software is furnished to 
 do so, subject to the following conditions:
 .
 Redistributions of source code must retain the above copyright notice, 
 this list of conditions and the following disclaimers.
 .
 Redistributions in binary form must reproduce the above copyright notice, 
 this list of conditions and the following disclaimers in the documentation 
 and/or other materials provided with the distribution.
 .
 Neither the names of Theoretical and Computational Biophysics Group, 
 University of Illinois at Urbana-Champaign, nor the names of its contributors 
 may be used to endorse or promote products derived from this Software without 
 specific prior written permission.
 .
 THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.  IN NO EVENT SHALL 
 THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR 
 OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, 
 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR 
 OTHER DEALINGS WITH THE SOFTWARE.

License: OFL
 "Gentium" is a Reserved Font Name for this Font Software.
 "SIL" is a Reserved Font Name for this Font Software.
 .
 This Font Software is licensed under the SIL Open Font License, Version 1.0.
 No modification of the license is permitted, only verbatim copy is allowed.
 This license is copied below, and is also available with a FAQ at:
 http://scripts.sil.org/OFL
 .
 SIL OPEN FONT LICENSE Version 1.0 - 22 November 2005
 .
 PREAMBLE
 The goals of the Open Font License (OFL) are to stimulate worldwide
 development of cooperative font projects, to support the font creation
 efforts of academic and linguistic communities, and to provide an open
 framework in which fonts may be shared and improved in partnership with
 others.
 .
 The OFL allows the licensed fonts to be used, studied, modified and
 redistributed freely as long as they are not sold by themselves. The
 fonts, including any derivative works, can be bundled, embedded, 
 redistributed and sold with any software provided that the font
 names of derivative works are changed. The fonts and derivatives,
 however, cannot be released under any other type of license.
 .
 DEFINITIONS
 "Font Software" refers to any and all of the following:
 	- font files
 	- data files
 	- source code
 	- build scripts
 	- documentation
 .
 "Reserved Font Name" refers to the Font Software name as seen by
 users and any other names as specified after the copyright statement.
 .
 "Standard Version" refers to the collection of Font Software
 components as distributed by the Copyright Holder.
 .
 "Modified Version" refers to any derivative font software made by
 adding to, deleting, or substituting -- in part or in whole --
 any of the components of the Standard Version, by changing formats
 or by porting the Font Software to a new environment.
 .
 "Author" refers to any designer, engineer, programmer, technical
 writer or other person who contributed to the Font Software.
 .
 PERMISSION & CONDITIONS
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of the Font Software, to use, study, copy, merge, embed, modify,
 redistribute, and sell modified and unmodified copies of the Font
 Software, subject to the following conditions:
 .
 1) Neither the Font Software nor any of its individual components,
 in Standard or Modified Versions, may be sold by itself.
 .
 2) Standard or Modified Versions of the Font Software may be bundled,
 redistributed and sold with any software, provided that each copy
 contains the above copyright notice and this license. These can be
 included either as stand-alone text files, human-readable headers or
 in the appropriate machine-readable metadata fields within text or
 binary files as long as those fields can be easily viewed by the user.
 .
 3) No Modified Version of the Font Software may use the Reserved Font
 Name(s), in part or in whole, unless explicit written permission is
 granted by the Copyright Holder. This restriction applies to all 
 references stored in the Font Software, such as the font menu name and
 other font description fields, which are used to differentiate the
 font from others.
 .
 4) The name(s) of the Copyright Holder or the Author(s) of the Font
 Software shall not be used to promote, endorse or advertise any
 Modified Version, except to acknowledge the contribution(s) of the
 Copyright Holder and the Author(s) or with their explicit written
 permission.
 .
 5) The Font Software, modified or unmodified, in part or in whole,
 must be distributed using this license, and may not be distributed
 under any other license.
 .
 TERMINATION
 This license becomes null and void if any of the above conditions are
 not met.
 .
 DISCLAIMER
 THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT
 OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE
 COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
 INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL
 DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM
 OTHER DEALINGS IN THE FONT SOFTWARE.