/usr/include/trilinos/Zoltan2_StridedData.hpp is in libtrilinos-zoltan2-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 | // @HEADER
//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Karen Devine (kddevin@sandia.gov)
// Erik Boman (egboman@sandia.gov)
// Siva Rajamanickam (srajama@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef _ZOLTAN2_STRIDEDDATA_HPP_
#define _ZOLTAN2_STRIDEDDATA_HPP_
#include <Zoltan2_Standards.hpp>
#include <Zoltan2_Environment.hpp>
#include <typeinfo>
/*! \file Zoltan2_StridedData.hpp
* \brief This file defines the StridedData class.
*/
namespace Zoltan2{
/*! \brief The StridedData class manages lists of weights or coordinates.
*
* A likely representation for multi-dimensional weights or coordinates is
* an array ordered by identifier by dimension, or vice versa. The purposes
* of this class:
*
* \li to make it easy for applications to supply these arrays to Zoltan2.
* \li to provide a [] operator for algorithm's access to strided arrays.
* \li to create contiguous arrays of weights or coordinates if needed by
* the algorithm.
* \li to create a contiguous array of weights using the data type required
* by the algorithm.
*
* If we need to modify weights (say convert floating point weights to
* integers for a third party library) methods to do this could be added here.
*/
template<typename lno_t, typename scalar_t>
class StridedData {
private:
ArrayRCP<const scalar_t> vec_;
int stride_;
public:
/*! \brief Constructor
*
* \param x x[0] is the first element of the array. The subsequent
* elements are at x[i * \c stride].
* \param stride the stride of the elements in the strided array.
*/
StridedData(ArrayRCP<const scalar_t> x, int stride) :
vec_(x), stride_(stride)
{ }
/*! \brief Default constructor. A zero-length strided array.
*/
StridedData(): vec_(), stride_(0)
{ }
/*! \brief Return the length of the strided array.
*
* The length may be longer than the number of values because the
* stride may be greater than one.
*/
lno_t size() const { return vec_.size(); }
/*! \brief Access an element of the input array.
*
* \param idx The logical index of the element in the strided array.
*
* For performance, this is inline and no error checking.
*/
scalar_t operator[](lno_t idx) const { return vec_[idx*stride_]; }
/*! \brief Create a contiguous array of the required type,
perhaps for a TPL.
*
* TODO: if are there particular conversions we would like to do
* for TPLs, we can add methods to do that. Here we just
* essentially cast. If the cast is not valid (like double to float)
* an exception is thrown.
*/
template <typename T> void getInputArray(ArrayRCP<const T> &array) const;
/*! \brief Get a reference counted pointer to the input.
\param vec on return is a reference counted pointer to the input.
Element \c k is at <tt>vec[k*stride]</tt>.
\param stride is describes the layout of the input in \c vec.
*/
void getStridedList(ArrayRCP<const scalar_t> &vec, int &stride) const
{
vec = vec_;
stride = stride_;
}
/*! \brief Get the raw input information.
\param len on return is the length of storage at \c vec. This will
be some multiple of stride.
\param vec on return is a pointer to the input.
Element \c k is at <tt>vec[k*stride]</tt>.
\param stride is describes the layout of the input in \c vec.
*/
void getStridedList(size_t &len, const scalar_t *&vec, int &stride) const
{
len = vec_.size();
if (len != 0) vec = vec_.getRawPtr();
else vec = NULL;
stride = stride_;
}
/*! \brief Assignment operator
*/
StridedData & operator= (const StridedData &sInput)
{
if (this != &sInput)
sInput.getStridedList(vec_, stride_);
return *this;
}
};
template<typename lno_t, typename scalar_t>
template<typename T>
void StridedData<lno_t, scalar_t>::getInputArray(
ArrayRCP<const T> &array) const
{
if (vec_.size() < 1){
array = ArrayRCP<const T>();
}
else if (stride_==1 && typeid(T()) == typeid(scalar_t())){
array = vec_;
}
else {
// Create an unstrided copy
Environment env; // a default environment for error reporting
size_t n = vec_.size() / stride_;
T *tmp = new T [n];
env.localMemoryAssertion(__FILE__, __LINE__, n, tmp);
for (size_t i=0,j=0; i < n; i++,j+=stride_){
tmp[i] = static_cast<T>(vec_[j]);
}
array = arcp(tmp, 0, n);
}
return;
}
} // namespace Zoltan2
#endif
|