/usr/include/trilinos/Zoltan2_MachineLDMS.hpp is in libtrilinos-zoltan2-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 | #ifndef _ZOLTAN2_MACHINEDEFAULT_HPP_
#define _ZOLTAN2_MACHINEDEFAULT_HPP_
#include <Teuchos_Comm.hpp>
#include <Teuchos_CommHelpers.hpp>
namespace Zoltan2{
/*! \brief A Default MachineRepresentation Class for testing only
* A more correct machine representation should be used for task mapping.
*/
template <typename nNo_t, typename nCoord_t>
class DefaultMachine : public MachineRepresentation<nNo_t, nCoord_t> {
private:
int networkDim;
int numProcs;
int myRank;
nCoord_t **procCoords; // KDD Maybe should be RCP?
public:
/*! \brief Constructor MachineRepresentation Class
* \param comm_ Communication object.
*/
MachineRepresentation(const Comm<int> &comm):
networkDim(0), numProcs(comm.getSize()), myRank(comm.getRank()),
procCoords(NULL)
{
// WIll need this constructor to be specific to RAAMP (MD).
// Will need a default constructor using, e.g., GeometricGenerator
// or nothing at all, for when RAAMP is not available as TPL.
//
// (AG) In addition, need to be able to run without special
// privileges in system (e.g., on hopper).
// Notes: For now, all cores connected to same NIC will get the
// same coordinates; later, we could add extra coordinate dimensions
// to represent nodes or dies (using hwloc info through RAAMP
// data object).
// (MD) will modify mapping test to use machine representation
// #ifdef HAVE_ZOLTAN2_OVIS
// Call initializer for RAAMP data object (AG)
//get network dimension.
//TODO change.
// Call RAAMP Data Object to get the network dimension (AG)
networkDim = 3;
//allocate memory for processor coordinates.
procCoords = new nCoord_t *[networkDim];
for (int i = 0; i < networkDim; ++i){
procCoords[i] = new nCoord_t [numProcs];
memset (procCoords[i], 0, sizeof(nCoord_t) * numProcs);
}
//obtain the coordinate of the processor.
this->getMyCoordinate(/*nCoord_t &xyz[networkDim]*/);
// copy xyz into appropriate spot in procCoords. (MD) // KDD I agree with this
//reduceAll the coordinates of each processor.
this->gatherMachineCoordinates();
}
/*! \brief Constructor MachineRepresentation Class
* \param comm_ Communication object.
*/
MachineRepresentation(const RCP<Comm<int> > &comm_):
networkDim(0), numProcs(comm_->getSize()), procCoords(0), comm(comm_){
// WIll need this constructor to be specific to RAAMP (MD).
// Will need a default constructor using, e.g., GeometricGenerator
// or nothing at all, for when RAAMP is not available as TPL.
//
// (AG) In addition, need to be able to run without special
// privileges in system (e.g., on hopper).
// Notes: For now, all cores connected to same NIC will get the
// same coordinates; later, we could add extra coordinate dimensions
// to represent nodes or dies (using hwloc info through RAAMP
// data object).
// (MD) will modify mapping test to use machine representation
// #ifdef HAVE_ZOLTAN2_OVIS
// Call initializer for RAAMP data object (AG)
//get network dimension.
//TODO change.
// Call RAAMP Data Object to get the network dimension (AG)
networkDim = 3;
//allocate memory for processor coordinates.
procCoords = new nCoord_t *[networkDim];
for (int i = 0; i < networkDim; ++i){
procCoords[i] = new nCoord_t [numProcs];
memset (procCoords[i], 0, sizeof(nCoord_t) * numProcs);
}
//obtain the coordinate of the processor.
this->getMyCoordinate(/*nCoord_t &xyz[networkDim]*/);
// copy xyz into appropriate spot in procCoords. (MD) // KDD I Agree.
//reduceAll the coordinates of each processor.
this->gatherMachineCoordinates();
}
/*! \brief getMyCoordinate function
* stores the coordinate of the current processor in procCoords[*][rank]
*/
void getMyCoordinate(/* nCoord_t &xyz[networkDim]*/){ // KDD Enable the argument rather
// KDD than writing into array here
// Call RAAMP system to get coordinates and store in xyz (MD)
// What is the RAAMP call? (AG)
// AG will return a view (pointer) to RAAMP's data.
// We will copy it into xyz.
//KDD #if defined(HAVE_ZOLTAN2_LDMS)
//KDD #elif defined(HAVE_ZOLTAN2_TOPOMGR)
//KDD #elif defined(HAVE_ZOLTAN2_RCA)
//KDD #else
// The code below may be good for the default constructor, perhaps,
// but it should copy the data into xyz instead of the procCoords.
int myRank = comm->getRank();
int slice = int (pow( double(numProcs), double(1.0 / networkDim)) + 0.5 );
int m = myRank;
for (int i = 0; i < networkDim; ++i){
procCoords[i][myRank] = m / int(pow(slice, double(networkDim - i - 1)));
m = m % int(pow(double(slice), double(networkDim - i - 1)));
}
//KDD #endif
}
// KDD Need to return coordinate of any rank?
// void getCoordinate(partId_t rank, nCoord_t &xyz[networkDim]) { }
/*! \brief gatherMachineCoordinates function
* reduces and stores all machine coordinates.
*/
void gatherMachineCoordinates(){ // KDD Should be private
nCoord_t *tmpVect = new nCoord_t [numProcs];
for (int i = 0; i < networkDim; ++i){
reduceAll<int, nCoord_t>(
*comm,
Teuchos::REDUCE_SUM,
numProcs,
procCoords[i],
tmpVect);
nCoord_t *tmp = tmpVect;
tmpVect = procCoords[i];
procCoords[i] = tmp;
}
delete [] tmpVect;
}
/*! \brief destructor of the class
* free memory in procCoords.
*/
virtual ~MachineRepresentation() {
for (int i = 0; i < networkDim; ++i){
delete [] procCoords[i];
}
delete [] procCoords;
// Free/release THE RAAMP Data Object.
// Deinitialize/finalize/whatever (AG)
}
/*! \brief getProcDim function
* returns the dimension of the physical processor layout.
*/
int getProcDim() const{ // KDD Maybe getNetworkDim or getProcCoordDim
return networkDim;
}
/*! \brief getProcDim function
* returns the coordinates of processors in two dimensional array.
*/
nCoord_t** getProcCoords() const{ // KDD Make clear that returning a View; maybe return ArrayView
return procCoords;
}
/*! \brief getNumProcs function
* returns the number of processors.
*/
int getNumProcs() const{
return numProcs;
}
// KDD TODO: Need more for full LDMS interface.
};
}
#endif
|