/usr/include/trilinos/Zoltan2_GraphAdapter.hpp is in libtrilinos-zoltan2-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 | // @HEADER
//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Karen Devine (kddevin@sandia.gov)
// Erik Boman (egboman@sandia.gov)
// Siva Rajamanickam (srajama@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
/*! \file Zoltan2_GraphAdapter.hpp
\brief Defines the GraphAdapter interface.
*/
#ifndef _ZOLTAN2_GRAPHADAPTER_HPP_
#define _ZOLTAN2_GRAPHADAPTER_HPP_
#include <Zoltan2_Adapter.hpp>
#include <Zoltan2_VectorAdapter.hpp>
namespace Zoltan2 {
/*! \brief Enumerated entity type for graphs: Vertices or Edges
*/
enum GraphEntityType {
GRAPH_VERTEX,
GRAPH_EDGE
};
/*! \brief GraphAdapter defines the interface for graph-based user data.
Adapter objects provide access for Zoltan2 to the user's data.
Many built-in adapters are already defined for common data structures,
such as Tpetra and Epetra objects and C-language pointers to arrays.
Data types:
\li \c scalar_t vertex and edge weights
\li \c lno_t local indices and local counts
\li \c gno_t global indices and global counts
\li \c node_t is a Kokkos Node type
The Kokkos node type can be safely ignored.
The template parameter \c User is a user-defined data type
which, through a traits mechanism, provides the actual data types
with which the Zoltan2 library will be compiled.
\c User may be the actual class or structure used by application to
represent a vector, or it may be the helper class BasicUserTypes.
See InputTraits for more information.
The \c scalar_t type, representing use data such as matrix values, is
used by Zoltan2 for weights, coordinates, part sizes and
quality metrics.
Some User types (like Tpetra::CrsMatrix) have an inherent scalar type,
and some
(like Tpetra::CrsGraph) do not. For such objects, the scalar type is
set by Zoltan2 to \c float. If you wish to change it to double, set
the second template parameter to \c double.
*/
template <typename User, typename UserCoord=User>
class GraphAdapter : public BaseAdapter<User> {
private:
enum GraphEntityType primaryEntityType; // Entity (vertex or edge) to
// be partitioned, ordered,
// colored, matched, etc.
enum GraphEntityType adjacencyEntityType; // Entity (edge or vertex)
// describing adjacencies;
// typically opposite of
// primaryEntityType.
VectorAdapter<UserCoord> *coordinateInput_; // A VectorAdapter containing
// coordinates of the objects
// with primaryEntityType;
// optional.
bool haveCoordinateInput_; // Flag indicating whether
// coordinateInput_ is provided.
public:
#ifndef DOXYGEN_SHOULD_SKIP_THIS
typedef typename InputTraits<User>::scalar_t scalar_t;
typedef typename InputTraits<User>::lno_t lno_t;
typedef typename InputTraits<User>::gno_t gno_t;
typedef typename InputTraits<User>::node_t node_t;
typedef User user_t;
typedef UserCoord userCoord_t;
typedef GraphAdapter<User, UserCoord> base_adapter_t;
#endif
enum BaseAdapterType adapterType() const {return GraphAdapterType;}
/*! \brief Destructor
*/
virtual ~GraphAdapter() {};
// Default GraphEntityType is GRAPH_VERTEX.
GraphAdapter() : primaryEntityType(GRAPH_VERTEX),
adjacencyEntityType(GRAPH_EDGE),
coordinateInput_(),
haveCoordinateInput_(false) {}
////////////////////////////////////////////////////////////////////////////
// Methods to be defined in derived classes.
/*! \brief Returns the number of vertices on this process.
*/
virtual size_t getLocalNumVertices() const = 0;
/*! \brief Returns the number of edges on this process.
*/
virtual size_t getLocalNumEdges() const = 0;
/*! \brief Sets pointers to this process' graph entries.
\param vertexIds will on return a pointer to vertex global Ids
*/
virtual void getVertexIDsView(const gno_t *&vertexIds) const = 0;
/*! \brief Gets adjacency lists for all vertices in a compressed
sparse row (CSR) format.
\param offsets is an array of size getLocalNumVertices() + 1.
The neighboring vertices for vertexId[i]
begin at adjIds[offsets[i]].
The last element of offsets is the size of the adjIds array.
\param adjIds on return will point to the array of adjacent vertices for
for each vertex.
*/
virtual void getEdgesView(const lno_t *&offsets,
const gno_t *&adjIds) const = 0;
/*! \brief Returns the number (0 or greater) of weights per vertex
*/
virtual int getNumWeightsPerVertex() const { return 0; }
/*! \brief Provide a pointer to the vertex weights, if any.
\param weights is the list of weights of the given index for
the vertices returned in getVertexIDsView().
\param stride The k'th weight is located at weights[stride*k]
\param idx ranges from zero to one less than getNumWeightsPerVertex().
*/
virtual void getVertexWeightsView(const scalar_t *&weights, int &stride,
int idx = 0) const
{
weights = NULL;
stride = 0;
Z2_THROW_NOT_IMPLEMENTED
}
/*! \brief Indicate whether vertex weight with index idx should be the
* global degree of the vertex
*/
virtual bool useDegreeAsVertexWeight(int idx) const
{
return false;
}
/*! \brief Returns the number (0 or greater) of edge weights.
*/
virtual int getNumWeightsPerEdge() const { return 0; }
/*! \brief Provide a pointer to the edge weights, if any.
\param weights is the list of weights of the given index for
the edges returned in getEdgeView().
\param stride The k'th weight is located at weights[stride*k]
\param idx ranges from zero to one less than getNumWeightsPerEdge().
*/
virtual void getEdgeWeightsView(const scalar_t *&weights, int &stride,
int idx = 0) const
{
weights = NULL;
stride = 0;
Z2_THROW_NOT_IMPLEMENTED
}
/*! \brief Allow user to provide additional data that contains coordinate
* info associated with the MatrixAdapter's primaryEntityType.
* Associated data must have the same parallel distribution and
* ordering of entries as the primaryEntityType.
*
* \param coordData is a pointer to a VectorAdapter with the user's
* coordinate data.
*/
void setCoordinateInput(VectorAdapter<UserCoord> *coordData)
{
coordinateInput_ = coordData;
haveCoordinateInput_ = true;
}
/*! \brief Indicate whether coordinate information has been set for this
* MatrixAdapter
*/
bool coordinatesAvailable() const { return haveCoordinateInput_; }
/*! \brief Obtain the coordinate data registered by the user.
* \return pointer a VectorAdapter with the user's coordinate data.
*/
VectorAdapter<UserCoord> *getCoordinateInput() const
{
return coordinateInput_;
}
////////////////////////////////////////////////////////////////////////////
// Implementations of base-class methods
/*! \brief Returns the entity to be partitioned, ordered, colored, etc.
* Valid values are GRAPH_VERTEX or GRAPH_EDGE.
*/
inline enum GraphEntityType getPrimaryEntityType() const {
return this->primaryEntityType;
}
/*! \brief Sets the primary entity type. Called by algorithm based on
* parameter value in parameter list from application.
* Also sets to adjacencyEntityType to something reasonable: opposite of
* primaryEntityType.
*/
void setPrimaryEntityType(std::string typestr) {
if (typestr == "vertex") {
this->primaryEntityType = GRAPH_VERTEX;
this->adjacencyEntityType = GRAPH_EDGE;
}
else if (typestr == "edge") {
this->primaryEntityType = GRAPH_EDGE;
this->adjacencyEntityType = GRAPH_VERTEX;
}
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: Invalid GraphEntityType " << typestr << std::endl;
emsg << "Valid values are 'vertex' and 'edge'" << std::endl;
throw std::runtime_error(emsg.str());
}
}
/*! \brief Returns the entity that describes adjacencies between the
* entities to be partitioned, ordered, colored, etc.
* Valid values are GRAPH_VERTEX or GRAPH_EDGE.
*/
inline enum GraphEntityType getAdjacencyEntityType() const {
return this->adjacencyEntityType;
}
/*! \brief Sets the adjacency entity type. Called by algorithm based on
* parameter value in parameter list from application.
* Also sets to primaryEntityType to something reasonable: opposite of
* adjacencyEntityType.
*/
void setAdjacencyEntityType(std::string typestr) {
if (typestr == "vertex") {
this->adjacencyEntityType = GRAPH_VERTEX;
this->primaryEntityType = GRAPH_EDGE;
}
else if (typestr == "edge") {
this->adjacencyEntityType = GRAPH_EDGE;
this->primaryEntityType = GRAPH_VERTEX;
}
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: Invalid GraphEntityType " << typestr << std::endl;
emsg << "Valid values are 'vertex' and 'edge'" << std::endl;
throw std::runtime_error(emsg.str());
}
}
// Functions from the BaseAdapter interface
size_t getLocalNumIDs() const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
return getLocalNumVertices();
else
return getLocalNumEdges();
}
void getIDsView(const gno_t *&Ids) const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
getVertexIDsView(Ids);
else {
// TODO: Need getEdgeIDsView? What is an Edge ID?
// TODO: std::pair<gno_t, gno_t>?
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: getIDsView not yet supported for graph edges."
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
int getNumWeightsPerID() const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
return getNumWeightsPerVertex();
else
return getNumWeightsPerEdge();
}
void getWeightsView(const scalar_t *&wgt, int &stride, int idx = 0) const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
getVertexWeightsView(wgt, stride, idx);
else {
// TODO: Need getEdgeWeightsView that lets Edges be primary object?
// TODO: That is, get edge weights based on some Edge ID.
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: getWeightsView not yet supported for graph edges."
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
bool useDegreeAsWeight(int idx) const
{
if (this->getPrimaryEntityType() == GRAPH_VERTEX)
return useDegreeAsVertexWeight(idx);
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: useDegreeAsWeight is supported only for vertices"
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
};
} //namespace Zoltan2
#endif
|