This file is indexed.

/usr/include/trilinos/Thyra_BelosLinearOpWithSolve_decl.hpp is in libtrilinos-stratimikos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
/*
// @HEADER
// ***********************************************************************
// 
//         Stratimikos: Thyra-based strategies for linear solvers
//                Copyright (2006) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Roscoe A. Bartlett (rabartl@sandia.gov) 
// 
// ***********************************************************************
// @HEADER
*/


#ifndef THYRA_BELOS_LINEAR_OP_WITH_SOLVE_DECL_HPP
#define THYRA_BELOS_LINEAR_OP_WITH_SOLVE_DECL_HPP

#include "Thyra_LinearOpWithSolveBase.hpp"
#include "Thyra_LinearOpSourceBase.hpp"
#include "BelosSolverManager.hpp"
#include "BelosThyraAdapter.hpp"
#include "Teuchos_StandardMemberCompositionMacros.hpp"


namespace Thyra {


/** \brief Concrete <tt>LinearOpWithSolveBase</tt> subclass in terms of
 * <tt>Belos</tt>.
 *
 * ToDo: Finish documentation!
 *
 * \ingroup Belos_Thyra_adapters_grp
 */
template<class Scalar>
class BelosLinearOpWithSolve : virtual public LinearOpWithSolveBase<Scalar>
{
public:

  /** @name Public typedefs */
  //@{

  /** \brief. */
  typedef MultiVectorBase<Scalar>    MV_t;
  /** \brief. */
  typedef LinearOpBase<Scalar>       LO_t;

  //@}

  /** @name Constructors/initializers/accessors */
  //@{

  /// Construct to unintialize.
  BelosLinearOpWithSolve();

  /** \brief Initializes given precreated solver objects.
   *
   * \param lp [in] The linear problem that was used to initialize the
   * iterative solver.  The RHS and LHS arguments are set on this object to
   * solve a linear system.
   *
   * \param solverPL [in] Parameter list that is used by the iterative solver.
   *
   * \param iterativeSolver [in] The iterative solver manager that will be
   * used to solve for linear systems.  This has links to <tt>*lp</tt>,
   * <tt>*solverPL</tt> already embedded.
   *
   * \param fwdOpSrc [in] The source for the forward operator object defining
   * the linear system.  This object is not used here, it is just being
   * "remembered" so that it can be extracted by
   * <tt>BelosLinearOpWithSolveFactory::unitializeOp()</tt>.
   *
   * \param prec [in] The preconditioner object that was used to get the
   * preconditioners set in <tt>*lp</tt> This object is not used here, it is
   * just being "remembered" so that it can be extracted by
   * <tt>BelosLinearOpWithSolveFactory::unitializeOp()</tt>.
   *
   * \param isExternalPrec [in] Determines if the preconditioner was set by an
   * external client or was created internally by the
   * <tt>BelosLinearOpWithSolveFactory</tt> object.  This is not used here, it
   * is just being "remembered" so that it can be used in the logic for
   * <tt>BelosLinearOpWithSolveFactory::unitializeOp()</tt>.
   *
   * \param approxFwdOpSrc [in] The external approximate forward operator
   * object that was used to create the internal preconditioner.  This object
   * is not used here, it is just being "remembered" so that it can be
   * extracted by <tt>BelosLinearOpWithSolveFactory::unitializeOp()</tt>.
   *
   * \param supportSolveUse [in] Argument passed to
   * <tt>BelosLinearOpWithSolveFactory</tt> that is being remembered here to
   * be passed back to <tt>BelosLinearOpWithSolveFactory::unitializeOp()</tt>.
   *
   * ToDo: Finish documentation!
   */
  void initialize(
    const RCP<Belos::LinearProblem<Scalar,MV_t,LO_t> > &lp,
    const RCP<Teuchos::ParameterList> &solverPL,
    const RCP<Belos::SolverManager<Scalar,MV_t,LO_t> > &iterativeSolver,
    const RCP<const LinearOpSourceBase<Scalar> > &fwdOpSrc,
    const RCP<const PreconditionerBase<Scalar> > &prec,
    const bool isExternalPrec,
    const RCP<const LinearOpSourceBase<Scalar> > &approxFwdOpSrc,
    const ESupportSolveUse &supportSolveUse,
    const int convergenceTestFrequency
    );

  /** \brief . */
  RCP<const LinearOpSourceBase<Scalar> > extract_fwdOpSrc();

  /** \brief . */
  RCP<const PreconditionerBase<Scalar> > extract_prec();

  /** \brief . */
  bool isExternalPrec() const;

  /** \brief . */
  RCP<const LinearOpSourceBase<Scalar> > extract_approxFwdOpSrc();

  /** \brief . */
  ESupportSolveUse supportSolveUse() const;

  /** \brief Uninitializes and returns stored quantities.
   *
   * ToDo: Finish documentation!
   */
  void uninitialize(
    RCP<Belos::LinearProblem<Scalar,MV_t,LO_t> > *lp = NULL,
    RCP<Teuchos::ParameterList> *solverPL = NULL,
    RCP<Belos::SolverManager<Scalar,MV_t,LO_t> > *iterativeSolver = NULL,
    RCP<const LinearOpSourceBase<Scalar> > *fwdOpSrc = NULL,
    RCP<const PreconditionerBase<Scalar> > *prec = NULL,
    bool *isExternalPrec = NULL,
    RCP<const LinearOpSourceBase<Scalar> > *approxFwdOpSrc = NULL,
    ESupportSolveUse *supportSolveUse = NULL
    );

  //@}

  /** @name Overridden from LinearOpBase */
  //@{
  /** \brief. */
  RCP< const VectorSpaceBase<Scalar> > range() const;
  /** \brief. */
  RCP< const VectorSpaceBase<Scalar> > domain() const;
  /** \brief. */
  RCP<const LinearOpBase<Scalar> > clone() const;
  //@}

  /** @name Overridden from Teuchos::Describable */
  //@{
  /** \brief . */
  std::string description() const;
  /** \brief . */
  void describe(
    Teuchos::FancyOStream &out,
    const Teuchos::EVerbosityLevel verbLevel
    ) const;
  //@}

  /** @name Overridden from ParameterListAcceptor */
  //@{

  /** \brief . */
  void setParameterList(RCP<Teuchos::ParameterList> const& paramList);
  /** \brief . */
  RCP<Teuchos::ParameterList> getNonconstParameterList();
  /** \brief . */
  RCP<Teuchos::ParameterList> unsetParameterList();
  /** \brief . */
  RCP<const Teuchos::ParameterList> getParameterList() const;
  /** \brief . */
  RCP<const Teuchos::ParameterList> getValidParameters() const;

  //@}

protected:

  /** @name Overridden from LinearOpBase  */
  //@{
  /** \brief . */
  virtual bool opSupportedImpl(EOpTransp M_trans) const;
  /** \brief . */
  virtual void applyImpl(
    const EOpTransp M_trans,
    const MultiVectorBase<Scalar> &X,
    const Ptr<MultiVectorBase<Scalar> > &Y,
    const Scalar alpha,
    const Scalar beta
    ) const;
  //@}

  /** @name Overridden from LinearOpWithSolveBase. */
  //@{
  /** \brief . */
  virtual bool solveSupportsImpl(EOpTransp M_trans) const;
  /** \brief . */
  virtual bool solveSupportsNewImpl(EOpTransp transp,
    const Ptr<const SolveCriteria<Scalar> > solveCriteria) const;
  /** \brief . */
  virtual bool solveSupportsSolveMeasureTypeImpl(
    EOpTransp M_trans, const SolveMeasureType& solveMeasureType
    ) const;
  /** \brief . */
  virtual SolveStatus<Scalar> solveImpl(
    const EOpTransp transp,
    const MultiVectorBase<Scalar> &B,
    const Ptr<MultiVectorBase<Scalar> > &X,
    const Ptr<const SolveCriteria<Scalar> > solveCriteria
    ) const;
  //@}
  
private:
  
  // ///////////////////////////////
  // Private data members


  RCP<Belos::LinearProblem<Scalar,MV_t,LO_t> > lp_;
  RCP<Teuchos::ParameterList> solverPL_;
  RCP<Belos::SolverManager<Scalar,MV_t,LO_t> > iterativeSolver_;
  int convergenceTestFrequency_;

  RCP<const LinearOpSourceBase<Scalar> > fwdOpSrc_;
  RCP<const PreconditionerBase<Scalar> > prec_;
  bool isExternalPrec_;
  RCP<const LinearOpSourceBase<Scalar> > approxFwdOpSrc_;
  ESupportSolveUse supportSolveUse_;

  typename Teuchos::ScalarTraits<Scalar>::magnitudeType defaultTol_;
                                                     
  void assertInitialized() const;
  
};


} // namespace Thyra


#endif	// THYRA_BELOS_LINEAR_OP_WITH_SOLVE_DECL_HPP