This file is indexed.

/usr/include/trilinos/Stokhos_SymmetricDiagonalSpec.hpp is in libtrilinos-stokhos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
// @HEADER
// ***********************************************************************
//
//                           Stokhos Package
//                 Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Eric T. Phipps (etphipp@sandia.gov).
//
// ***********************************************************************
// @HEADER

#ifndef STOKHOS_SYMMETRIC_DIAGONAL_SPEC_HPP
#define STOKHOS_SYMMETRIC_DIAGONAL_SPEC_HPP

#include "Kokkos_StaticCrsGraph.hpp"

namespace Stokhos {

/** \brief  Symmetric diagonal storage for a dense matrix.
 *
 *  Block storage size = dimension * ( dimension + 1 ) / 2
 *
 *  Given block_dim then total_diagonal_count = 1 + dimension / 2
 *
 *  If dimension is even then the last diagonal is only half length.
 *
 *  { a11 , a22 , a33 , a44 , a55 , ... }
 *  { a12 , a23 , a34 , a45 , a56 , ... }
 *  { a13 , a24 , a35 , a46 , a57 , ... }
 *
 */
template< class ExecutionSpace >
class SymmetricDiagonalSpec {
public:

  typedef unsigned size_type;

  /** \brief  Dimension of vector block */
  KOKKOS_INLINE_FUNCTION
  unsigned dimension() const { return m_dimension ; }

  /** \brief  Storage location for the (row,column) entry */
  KOKKOS_INLINE_FUNCTION
  unsigned matrix_offset( const unsigned row , const unsigned column ) const
    {
      const int diag_count = 1 + ( m_dimension >> 1 );
      const int diag = (int) column - (int) row ;

      unsigned offset = 0 ;

      if ( ( 0 <= diag && diag < diag_count ) || ( diag <= - diag_count ) ) {
        offset = row + m_dimension * ( ( m_dimension + diag ) % m_dimension );
      }
      else {
        offset = column + m_dimension * ( ( m_dimension - diag ) % m_dimension );
      }

      return offset ;
    }

  /** \brief  Storage size for block coefficients */
  KOKKOS_INLINE_FUNCTION
  unsigned matrix_size() const
    { return ( m_dimension * ( m_dimension + 1 ) ) >> 1 ; }

  SymmetricDiagonalSpec()
    : m_dimension( 0 ) {}

  SymmetricDiagonalSpec( const SymmetricDiagonalSpec & rhs )
    : m_dimension( rhs.m_dimension ) {}

  SymmetricDiagonalSpec & operator =
    ( const SymmetricDiagonalSpec & rhs )
      { m_dimension = rhs.m_dimension ; return *this ; }

  explicit
  SymmetricDiagonalSpec( const unsigned dim )
    : m_dimension( dim ) {}

private:
  unsigned m_dimension ;
};

template < typename Device >
class BlockMultiply< SymmetricDiagonalSpec< Device > > {
public:
  typedef Device execution_space ;
  typedef typename execution_space::size_type size_type ;
  typedef SymmetricDiagonalSpec< execution_space > block_type ;

  template< typename MatrixValue , typename VectorValue >
  KOKKOS_INLINE_FUNCTION
  static void apply( const block_type  & block ,
                     const MatrixValue *       a ,
                     const VectorValue * const x ,
                           VectorValue * const y )
  {
    const size_type dimension = block.dimension();
    const size_type dim_half  = ( dimension + 1 ) >> 1 ;

    // Multiply the main diagonal (first diagonal)
    for ( size_type j = 0 ; j < dimension ; ++j ) {
      y[j] += a[j] * x[j] ; // Contiguous access
    }

    // Multiply remaining full diagionals, each diagonal is accessed twice
    for ( size_type d = 1 ; d < dim_half ; ++d ) {
      size_type kx  = d ;
      size_type kxr = dimension - d ;

      a += dimension ; // next diagonal

      for ( size_type j = 0 ; j < dimension ; ++j ) {
        y[j] += a[j] * x[kx] + a[kxr] * x[kxr]; // Contiguous access
        if ( dimension == ++kx )  kx = 0 ;
        if ( dimension == ++kxr ) kxr = 0 ;
      }
    }

    // If even number of diagonals then the last diagonal is half-length
    if ( ! ( dimension & 01 ) ) {
      size_type kx = dim_half ;

      a += dimension ; // next diagonal

      for ( size_type j = 0 ; j < dim_half ; ++j , ++kx ) {
        y[j]  += a[j] * x[kx] ; // Contiguous access
        y[kx] += a[j] * x[j] ;  // Contiguous access
      }
    }
  }

  KOKKOS_INLINE_FUNCTION
  static size_type matrix_size( const block_type & block )
    { return block.matrix_size(); }
};

} // namespace Stokhos

#endif /* #ifndef STOKHOS_SYMMETRIC_DIAGONAL_SPEC_HPP */