This file is indexed.

/usr/include/trilinos/Stokhos_OrthogPolyApprox.hpp is in libtrilinos-stokhos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
// $Id$ 
// $Source$ 
// @HEADER
// ***********************************************************************
// 
//                           Stokhos Package
//                 Copyright (2009) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Eric T. Phipps (etphipp@sandia.gov).
// 
// ***********************************************************************
// @HEADER

#ifndef STOKHOS_ORTHOGPOLYAPPROX_HPP
#define STOKHOS_ORTHOGPOLYAPPROX_HPP

#include "Teuchos_RCP.hpp"             // class data member
#include "Stokhos_OrthogPolyBasis.hpp" // class data member
#include <ostream>	               // for std::ostream

#include "Stokhos_StandardStorage.hpp"
#include "Stokhos_ProductBasisUtils.hpp"

namespace Stokhos {

  /*! 
   * \brief Class to store coefficients of a projection onto an orthogonal
   * polynomial basis.
   */
  template <typename ordinal_type, typename value_type, 
	    typename storage_type = Stokhos::StandardStorage<ordinal_type, 
							     value_type> >
  class OrthogPolyApprox {
  public:

    typedef typename storage_type::reference reference;
    typedef typename storage_type::const_reference const_reference;
    typedef typename storage_type::pointer pointer;
    typedef typename storage_type::const_pointer const_pointer;

    //! Constructor with supplied size \c sz
    /*!
     * Normally \c sz should equal the basis size, however this is not
     * enforced since other situations can arise, e.g., using a size of 1
     * for a constant expansion.  If \c sz = 0, it is computed from the basis
     * size (and is 1 if \c basis is null).
     */
    OrthogPolyApprox(
      const Teuchos::RCP<const Stokhos::OrthogPolyBasis<ordinal_type, value_type> >& basis = Teuchos::null,
      ordinal_type sz = 0,
      const value_type* vals = NULL);
    
    //! Copy constructor
    OrthogPolyApprox(const OrthogPolyApprox& x);
    
    //! Destructor
    ~OrthogPolyApprox();
    
    //! Assignment operator (deep copy)
    OrthogPolyApprox& operator=(const OrthogPolyApprox& x);

    //! Assignment operator with scalar
    OrthogPolyApprox& operator=(const value_type& v);

    //! Initialize coefficients to value
    void init(const value_type& v);

    //! Initialize coefficients to an array of values
    void init(const value_type* v);

    //! Initialize coefficients from an OrthogPolyApprox with different storage
    template <typename S>
    void init(const OrthogPolyApprox<ordinal_type, value_type, S>& v) {
      coeff_.init(v.coeff());
    }

    //! Load coefficients to an array of values
    void load(value_type* v);

    //! Load coefficients into an OrthogPolyApprox with different storage
    template <typename S>
    void load(OrthogPolyApprox<ordinal_type, value_type, S>& v) {
      coeff_.load(v.coeff());
    }

    //! Return basis
    Teuchos::RCP<const Stokhos::OrthogPolyBasis<ordinal_type, value_type> > 
    basis() const;

    //! Reset to a new basis
    /*!
     * This resizes array to fit new basis.  Coefficients are preserved.
     */
    void reset(const Teuchos::RCP<const Stokhos::OrthogPolyBasis<ordinal_type, value_type> >& new_basis, ordinal_type sz = 0);

    //! Resize coefficient array (coefficients are preserved)
    void resize(ordinal_type sz);

    //! Return size
    ordinal_type size() const;

    //! Return coefficient array
    pointer coeff();

    //! Return coefficient array
    const_pointer coeff() const;

    //! Array access
    reference operator[](ordinal_type i);

    //! Array access
    const_reference operator[](ordinal_type i) const;

    //! Get coefficient term for given dimension and order
    reference term(ordinal_type dimension, ordinal_type order);

    //! Get coefficient term for given dimension and order
    const_reference term(ordinal_type dimension, ordinal_type order) const;

    //! Get orders for a given term
    const MultiIndex<ordinal_type>& order(ordinal_type term) const;

    //! Evaluate polynomial approximation at a point
    value_type evaluate(const Teuchos::Array<value_type>& point) const;

    //! Evaluate polynomial approximation at a point with supplied basis values
    value_type evaluate(const Teuchos::Array<value_type>& point,
			const Teuchos::Array<value_type>& basis_vals) const;

    //! Compute mean of expansion
    value_type mean() const;

    //! Compute standard deviation of expansion
    value_type standard_deviation() const;

    //! Compute the two-norm of expansion
    value_type two_norm() const;

    //! Compute the squared two-norm of expansion
    value_type two_norm_squared() const;

    //! Compute the L2 inner product of 2 PCEs
    value_type inner_product(const OrthogPolyApprox& b) const;

    //! Print approximation in basis
    std::ostream& print(std::ostream& os) const;

  protected:

    //! Basis expansion is relative to
    Teuchos::RCP<const Stokhos::OrthogPolyBasis<ordinal_type, value_type> > basis_;

    //! OrthogPolyApprox coefficients
    storage_type coeff_;
    
  }; // class OrthogPolyApprox

  //! Prints the array of coefficients (more compact than print())
  template <typename ordinal_type, typename value_type, typename node_type> 
  std::ostream& 
  operator << (std::ostream& os, 
	       const OrthogPolyApprox<ordinal_type,value_type,node_type>& a);

} // namespace Stokhos

#include "Stokhos_OrthogPolyApproxImp.hpp"

#endif //  STOKHOS_ORTHOGPOLYAPPROX_HPP