This file is indexed.

/usr/include/trilinos/Sacado_Fad_SFad_MP_Vector.hpp is in libtrilinos-stokhos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
// @HEADER
// ***********************************************************************
//
//                           Sacado Package
//                 Copyright (2006) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact David M. Gay (dmgay@sandia.gov) or Eric T. Phipps
// (etphipp@sandia.gov).
//
// ***********************************************************************
//
// The forward-mode AD classes in Sacado are a derivative work of the
// expression template classes in the Fad package by Nicolas Di Cesare.
// The following banner is included in the original Fad source code:
//
// ************ DO NOT REMOVE THIS BANNER ****************
//
//  Nicolas Di Cesare <Nicolas.Dicesare@ann.jussieu.fr>
//  http://www.ann.jussieu.fr/~dicesare
//
//            CEMRACS 98 : C++ courses,
//         templates : new C++ techniques
//            for scientific computing
//
//********************************************************
//
//  A short implementation ( not all operators and
//  functions are overloaded ) of 1st order Automatic
//  Differentiation in forward mode (FAD) using
//  EXPRESSION TEMPLATES.
//
//********************************************************
// @HEADER

#ifndef SACADO_FAD_SFAD_MP_VECTOR_HPP
#define SACADO_FAD_SFAD_MP_VECTOR_HPP

#include "Sacado_Fad_SFad.hpp"
#include "Sacado_Fad_ExprSpec_MP_Vector.hpp"

namespace Stokhos {
  template <typename Ord, typename Val, int Num, typename Dev>
  class StaticFixedStorage;
}

namespace Sacado {

  namespace MP {
    template <typename S> class Vector;
  }

  namespace Fad {

    template <typename Ord, typename Val, int VecNum, typename Dev, int Num>
    struct ExprSpec< SFadExprTag< Sacado::MP::Vector< Stokhos::StaticFixedStorage<Ord,Val,VecNum,Dev> >, Num > > {
      typedef ExprSpecMPVector type;
    };
    template <typename Ord, typename Val, int VecNum, typename Dev, int Num>
    struct ExprSpec< SFad< Sacado::MP::Vector< Stokhos::StaticFixedStorage<Ord,Val,VecNum,Dev> >, Num > > {
      typedef ExprSpecMPVector type;
    };

    /*!
     * \brief Expression template forward-mode AD class with static memory
     * allocation.
     */
    /*!
     * This classes specializes Expr to SFad expressions.
     */
    template <typename Ord, typename Val, int VecNum, typename Dev, int Num>
    class Expr< SFadExprTag< Sacado::MP::Vector< Stokhos::StaticFixedStorage<Ord,Val,VecNum,Dev> >,Num >,ExprSpecMPVector > {

    public:

      typedef Sacado::MP::Vector< Stokhos::StaticFixedStorage<Ord,Val,VecNum,Dev> > T;

      //! Typename of values
      typedef typename RemoveConst<T>::type value_type;

      //! Typename of scalar's (which may be different from T)
      typedef typename ScalarType<value_type>::type scalar_type;

      //! Typename of base-expressions
      typedef SFad<value_type,Num> base_expr_type;

      typedef typename value_type::value_type val_type;

      /*!
       * @name Initialization methods
       */
      //@{

      //! Default constructor
      KOKKOS_INLINE_FUNCTION
      Expr() : val_( T(0.)) {
        ss_array<T>::zero(dx_, Num); }

      //! Constructor with supplied value \c x
      /*!
       * Initializes value to \c x and derivative array is empty
       */
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      Expr(const S & x, SACADO_ENABLE_VALUE_CTOR_DECL) :
        val_(x) {
        ss_array<T>::zero(dx_, Num);
      }

      //! Constructor with size \c sz and value \c x
      /*!
       * Initializes value to \c x and derivative array 0 of length \c sz
       */
      KOKKOS_INLINE_FUNCTION
      Expr(const int sz, const T & x, const DerivInit zero_out = InitDerivArray)  : val_(x) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (sz != Num)
          throw "SFad::SFad() Error:  Supplied derivative dimension does not match compile time length.";
#endif
        if (zero_out == InitDerivArray)
          ss_array<T>::zero(dx_, Num);
      }

      //! Constructor with size \c sz, index \c i, and value \c x
      /*!
       * Initializes value to \c x and derivative array of length \c sz
       * as row \c i of the identity matrix, i.e., sets derivative component
       * \c i to 1 and all other's to zero.
       */
      KOKKOS_INLINE_FUNCTION
      Expr(const int sz, const int i, const T & x) :
        val_(x) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (sz != Num)
          throw "SFad::SFad() Error:  Supplied derivative dimension does not match compile time length.";
        if (i >= Num)
          throw "SFad::SFad() Error:  Invalid derivative index.";
#endif

        ss_array<T>::zero(dx_, Num);
        dx_[i]=1.;
      }

      //! Copy constructor
      KOKKOS_INLINE_FUNCTION
      Expr(const Expr& x) :
        val_(x.val()) {
        for (int i=0; i<Num; i++)
          dx_[i] = x.dx_[i];
      }

      //! Copy constructor from any Expression object
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      Expr(const Expr<S>& x, SACADO_ENABLE_EXPR_CTOR_DECL) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::SFad() Error:  Attempt to assign with incompatible sizes";
#endif

        for(int i=0; i<Num; ++i) {
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) = x.fastAccessDx(i,j);
        }

        for (int j=0; j<VecNum; ++j)
          this->val(j) = x.val(j);
      }

      //! Destructor
      KOKKOS_INLINE_FUNCTION
      ~Expr() {}

      //! Set %Fad object as the \c ith independent variable
      /*!
       * Sets the derivative array of length \c n to the \c ith row of the
       * identity matrix and has the same affect as the
       * Implementation(const int sz, const int i, const T & x)
       * constructor.
       */
      KOKKOS_INLINE_FUNCTION
      void diff(const int ith, const int n) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (n != Num)
          throw "SFad::diff() Error:  Supplied derivative dimension does not match compile time length.";
#endif

        ss_array<T>::zero(dx_, Num);
        dx_[ith] = T(1.);
      }

      //! Resize derivative array to length \c sz
      /*!
       * Since the derivative array length is not dynamic, this method
       * throws an error if compiled with SACADO_DEBUG defined.
       */
      KOKKOS_INLINE_FUNCTION
      void resize(int sz) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (sz != Num)
          throw "SFad::resize() Error:  Cannot resize fixed derivative array dimension";
#endif
      }

      //! Expand derivative array to size sz
      /*!
       * Since the derivative array length is not dynamic, this method
       * throws an error if compiled with SACADO_DEBUG defined.
       */
      KOKKOS_INLINE_FUNCTION
      void expand(int sz) { resize(sz); }

      //! Zero out the derivative array
      KOKKOS_INLINE_FUNCTION
      void zero() { ss_array<T>::zero(dx_, Num); }

      //! Set whether this Fad object should update values
      KOKKOS_INLINE_FUNCTION
      void setUpdateValue(bool update_val) {  }

      //! Return whether this Fad object has an updated value
      KOKKOS_INLINE_FUNCTION
      bool updateValue() const { return true; }

      //! Returns whether two Fad objects have the same values
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(bool) isEqualTo(const Expr<S>& x) const {
        typedef IsEqual<value_type> IE;
        if (x.size() != this->size()) return false;
        bool eq = IE::eval(x.val(), this->val());
        for (int i=0; i<this->size(); i++)
          eq = eq && IE::eval(x.dx(i), this->dx(i));
        return eq;
      }

      //@}

      /*!
       * @name Value accessor methods
       */
      //@{

      //! Returns value
      KOKKOS_INLINE_FUNCTION
      const T& val() const { return val_;}

      //! Returns value
      KOKKOS_INLINE_FUNCTION
      T& val() { return val_;}

      //! Returns value
      KOKKOS_INLINE_FUNCTION
      const val_type& val(int j) const { return val_.fastAccessCoeff(j);}

      //! Returns value
      KOKKOS_INLINE_FUNCTION
      val_type& val(int j) { return val_.fastAccessCoeff(j);}

      //@}

      /*!
       * @name Derivative accessor methods
       */
      //@{

      //! Returns number of derivative components
      KOKKOS_INLINE_FUNCTION
      int size() const { return Num;}

      /*!
       * \brief Returns number of derivative components that can be stored
       * without reallocation
       */
      KOKKOS_INLINE_FUNCTION
      int availableSize() const { return Num; }

      //! Returns true if derivative array is not empty
      KOKKOS_INLINE_FUNCTION
      bool hasFastAccess() const { return true; }

      //! Returns true if derivative array is empty
      KOKKOS_INLINE_FUNCTION
      bool isPassive() const { return false; }

      //! Set whether variable is constant
      KOKKOS_INLINE_FUNCTION
      void setIsConstant(bool is_const) {}

      //! Returns derivative array
      KOKKOS_INLINE_FUNCTION
      const T* dx() const { return &(dx_[0]);}

      //! Returns derivative component \c i with bounds checking
      KOKKOS_INLINE_FUNCTION
      const T& dx(int i) const { return dx_[i]; }

      //! Returns derivative component \c i without bounds checking
      KOKKOS_INLINE_FUNCTION
      T& fastAccessDx(int i) { return dx_[i];}

      //! Returns derivative component \c i without bounds checking
      KOKKOS_INLINE_FUNCTION
      const T& fastAccessDx(int i) const { return dx_[i];}

      //! Returns derivative component \c i with bounds checking
      KOKKOS_INLINE_FUNCTION
      const val_type& dx(int i, int j) const { return dx_[i].fastAccessCoeff(j); }

      //! Returns derivative component \c i without bounds checking
      KOKKOS_INLINE_FUNCTION
      val_type& fastAccessDx(int i, int j) { return dx_[i].fastAccessCoeff(j);}

      //! Returns derivative component \c i without bounds checking
      KOKKOS_INLINE_FUNCTION
      const val_type& fastAccessDx(int i, int j) const { return dx_[i].fastAccessCoeff(j);}

      //@}

      /*!
       * @name Assignment operators
       */
      //@{

      //! Assignment operator with constant right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_VALUE_FUNC(Expr&) operator=(const S& v) {
        val_ = v;
        ss_array<T>::zero(dx_, Num);
        return *this;
      }

      //! Assignment with Expr right-hand-side
      KOKKOS_INLINE_FUNCTION
      Expr& operator=(const Expr& x) {
        if (this != &x) {
          // Copy value
          val_ = x.val_;

          // Copy dx_
          for (int i=0; i<Num; i++)
            dx_[i] = x.dx_[i];
        }
        return *this;
      }

      //! Assignment operator with any expression right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(Expr&) operator=(const Expr<S>& x) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::operator=() Error:  Attempt to assign with incompatible sizes";
#endif

       for(int i=0; i<Num; ++i) {
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) = x.fastAccessDx(i,j);
        }

        for (int j=0; j<VecNum; ++j)
          this->val(j) = x.val(j);

        return *this;
      }

      //@}

      /*!
       * @name Unary operators
       */
      //@{

      //! Addition-assignment operator with constant right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_VALUE_FUNC(Expr&) operator += (const S& v) {
        this->val() += v;
        return *this;
      }

      //! Subtraction-assignment operator with constant right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_VALUE_FUNC(Expr&) operator -= (const S& v) {
        this->val() -= v;
        return *this;
      }

      //! Multiplication-assignment operator with constant right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_VALUE_FUNC(Expr&) operator *= (const S& v) {
        this->val() *= v;
        for (int i=0; i<Num; ++i)
          dx_[i] *= v;
        return *this;
      }

      //! Division-assignment operator with constant right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_VALUE_FUNC(Expr&) operator /= (const S& v) {
        this->val() /= v;
        for (int i=0; i<Num; ++i)
          dx_[i] /= v;
        return *this;
      }

      //! Addition-assignment operator with Expr right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(Expr&) operator += (const Expr<S>& x) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::operator+=() Error:  Attempt to assign with incompatible sizes";
#endif

        for(int i=0; i<Num; ++i) {
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) += x.fastAccessDx(i,j);
        }

        for (int j=0; j<VecNum; ++j)
          this->val(j) += x.val(j);

        return *this;
      }

      //! Subtraction-assignment operator with Expr right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(Expr&) operator -= (const Expr<S>& x) {
#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::operator-=() Error:  Attempt to assign with incompatible sizes";
#endif

        for(int i=0; i<Num; ++i) {
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) -= x.fastAccessDx(i,j);
        }

        for (int j=0; j<VecNum; ++j)
          this->val(j) -= x.val(j);

        return *this;
      }

      //! Multiplication-assignment operator with Expr right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(Expr&) operator *= (const Expr<S>& x) {
        T xval;
        for (int j=0; j<VecNum; ++j)
          xval.fastAccessCoeff(j) = x.val(j);

#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::operator*=() Error:  Attempt to assign with incompatible sizes";
#endif

        for(int i=0; i<Num; ++i)
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) = val_.fastAccessCoeff(j) * x.fastAccessDx(i,j) + dx_[i] * xval.fastAccessCoeff(j);

        val_ *= xval;

        return *this;
      }

      //! Division-assignment operator with Expr right-hand-side
      template <typename S>
      KOKKOS_INLINE_FUNCTION
      SACADO_ENABLE_EXPR_FUNC(Expr&) operator /= (const Expr<S>& x) {
        T xval;
        for (int j=0; j<VecNum; ++j)
          xval.fastAccessCoeff(j) = x.val(j);
        T xval2 = xval*xval;

#if defined(SACADO_DEBUG) && !defined(__CUDA_ARCH__ )
        if (x.size() != Num)
          throw "SFad::operator/=() Error:  Attempt to assign with incompatible sizes";
#endif

        for(int i=0; i<Num; ++i)
          for (int j=0; j<VecNum; ++j)
            dx_[i].fastAccessCoeff(j) = ( dx_[i].fastAccessCoeff(j)*xval.fastAccessCoeff(j) - val_.fastAccessCoeff(j)*x.fastAccessDx(i,j) )/ (xval2.fastAccessCoeff(j));

        val_ /= xval;

        return *this;
      }

      //@}

    protected:

      //! Derivatives
      T dx_[Num];

      //! Value
      T val_;

    }; // class Expr<SFadExprTag>

  } // namespace Fad

} // namespace Sacado

#include "Sacado_Fad_Ops_MP_Vector.hpp"

#endif // SACADO_FAD_SFAD_MP_VECTOR_HPP