This file is indexed.

/usr/include/trilinos/Rythmos_PointwiseInterpolationBufferAppender.hpp is in libtrilinos-rythmos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
//@HEADER
// ***********************************************************************
//
//                     Rythmos Package
//                 Copyright (2006) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact Todd S. Coffey (tscoffe@sandia.gov)
//
// ***********************************************************************
//@HEADER

#ifndef RYTHMOS_POINTWISE_INTERPOLATION_BUFFER_APPENDER_HPP
#define RYTHMOS_POINTWISE_INTERPOLATION_BUFFER_APPENDER_HPP

#include "Rythmos_InterpolationBufferAppenderBase.hpp"
#include "Teuchos_ParameterListAcceptorDefaultBase.hpp"
#include "Teuchos_VerboseObjectParameterListHelpers.hpp"
#include "Rythmos_InterpolationBufferHelpers.hpp"


namespace Rythmos {


/** \brief Concrete InterplationBufferAppender subclass that just transfers
 * notes without any regard for accuracy or order.
 */
template<class Scalar>
class PointwiseInterpolationBufferAppender
  : virtual public InterpolationBufferAppenderBase<Scalar>,
    virtual public Teuchos::ParameterListAcceptorDefaultBase
{
public:

  /** \brief . */
  typedef typename Teuchos::ScalarTraits<Scalar>::magnitudeType ScalarMag;

  /** \brief Concrete implementation that simply copies the nodal points
   * between the interpolation buffers.
   */
  void append(
    const InterpolationBufferBase<Scalar>& interpBuffSource, 
    const TimeRange<Scalar>& range,
    const Ptr<InterpolationBufferBase<Scalar> > &interpBuffSink 
    );

  /** \name Overridden from Teuchos::Describable */
  //@{

  /** \brief . */
  void describe(
    Teuchos::FancyOStream &out,
    const Teuchos::EVerbosityLevel verbLevel
    ) const;

  //@}

  /** \name Overridden from ParameterListAcceptorDefaultBase */
  //@{

  /** \brief . */
  void setParameterList(const RCP<ParameterList> &paramList);

  /** \brief . */
  RCP<const ParameterList> getValidParameters() const;

  //@}

};



/** \brief Nonmember constructor function.
 *
 * \relates PointwiseInterpolationBufferAppender
 */
template<class Scalar>
RCP<PointwiseInterpolationBufferAppender<Scalar> >
pointwiseInterpolationBufferAppender()
{
  return Teuchos::rcp(new PointwiseInterpolationBufferAppender<Scalar>);
}


//
// Implementations
//


template<class Scalar>
void PointwiseInterpolationBufferAppender<Scalar>::append(
  const InterpolationBufferBase<Scalar>& interpBuffSource, 
  const TimeRange<Scalar>& appendRange,
  const Ptr<InterpolationBufferBase<Scalar> > &interpBuffSink 
  ) 
{
  TEUCHOS_ASSERT( !is_null(interpBuffSink) );
#ifdef HAVE_RYTHMOS_DEBUG
  this->assertAppendPreconditions(interpBuffSource,appendRange,*interpBuffSink);
#endif // HAVE_RYTHMOS_DEBUG

  RCP<Teuchos::FancyOStream> out = this->getOStream();
  Teuchos::OSTab ostab(out,1,"PointwiseInterpolationBufferAppender::append");
  if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
    *out << "Interpolation Buffer source range = [" << interpBuffSource.getTimeRange().lower() << "," <<
      interpBuffSource.getTimeRange().upper() << "]" << std::endl;
    *out << "Append range = [" << appendRange.lower() << "," << appendRange.upper() << "]" << std::endl;
    *out << "Interpolation Buffer sink range = [" << interpBuffSink->getTimeRange().lower() << "," <<
      interpBuffSink->getTimeRange().upper() << "]" << std::endl;
  }
  // Set up appendRange correctly to be either (] or [):
  RCP<const TimeRange<Scalar> > correctedAppendRange = Teuchos::rcp(&appendRange,false);
  if (compareTimeValues<Scalar>(interpBuffSink->getTimeRange().upper(),appendRange.lower()) == 0) {
    // adding to end of buffer 
    correctedAppendRange = Teuchos::rcp(new TimeRange_oc<Scalar>(appendRange));
    if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
      *out << "Corrected append range = (" << correctedAppendRange->lower() << "," << 
        correctedAppendRange->upper() << "]" << std::endl;
    }
  } 
  else if (compareTimeValues<Scalar>(interpBuffSink->getTimeRange().lower(),appendRange.upper()) == 0) {
    // adding to beginning of buffer
    correctedAppendRange = Teuchos::rcp(new TimeRange_co<Scalar>(appendRange));
    if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
      *out << "Corrected append range = [" << correctedAppendRange->lower() << "," << 
        correctedAppendRange->upper() << ")" << std::endl;
    }
  }

  Array<Scalar> time_vec_in;
  interpBuffSource.getNodes(&time_vec_in);

  Array<Scalar> time_vec;
  selectPointsInTimeRange(time_vec_in,*correctedAppendRange,Teuchos::outArg(time_vec));
  if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
    *out << "Selected points for appending to sink buffer: " << time_vec << std::endl;
  }

  Array<RCP<const Thyra::VectorBase<Scalar> > > x_vec;
  Array<RCP<const Thyra::VectorBase<Scalar> > > xdot_vec;
  Array<ScalarMag> accuracy_vec;
  interpBuffSource.getPoints(time_vec, &x_vec, &xdot_vec, &accuracy_vec);

  if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
    *out << "Sink buffer range before addPoints = [" << interpBuffSink->getTimeRange().lower() << "," <<
      interpBuffSink->getTimeRange().upper() << "]" << std::endl;
  }

  interpBuffSink->addPoints(time_vec, x_vec, xdot_vec);

  if ( Teuchos::as<int>(this->getVerbLevel()) >= Teuchos::as<int>(Teuchos::VERB_HIGH) ) {
    *out << "Sink buffer range after addPoints = [" << interpBuffSink->getTimeRange().lower() << "," <<
      interpBuffSink->getTimeRange().upper() << "]" << std::endl;
  }

}


template<class Scalar>
void PointwiseInterpolationBufferAppender<Scalar>::describe(
  Teuchos::FancyOStream &out,
  const Teuchos::EVerbosityLevel verbLevel
  ) const
{
  using Teuchos::as;
  if (
    (as<int>(verbLevel) == as<int>(Teuchos::VERB_DEFAULT))
    || (as<int>(verbLevel) >= as<int>(Teuchos::VERB_LOW))
    )
  {
    out << this->description() << std::endl;
  }
}


template<class Scalar>
void PointwiseInterpolationBufferAppender<Scalar>::setParameterList(
  const RCP<ParameterList> &paramList
  )
{
  TEUCHOS_TEST_FOR_EXCEPT( is_null(paramList) );
  paramList->validateParameters(*this->getValidParameters());
  Teuchos::readVerboseObjectSublist(&*paramList,this);
  setMyParamList(paramList);
}


template<class Scalar>
RCP<const ParameterList>
PointwiseInterpolationBufferAppender<Scalar>::getValidParameters() const
{
  static RCP<Teuchos::ParameterList> validPL;
  if (is_null(validPL)) {
    RCP<Teuchos::ParameterList> pl = Teuchos::parameterList();
    Teuchos::setupVerboseObjectSublist(&*pl);
    validPL = pl;
  }
  return (validPL);
}


} // namespace Rythmos


#endif //RYTHMOS_POINTWISE_INTERPOLATION_BUFFER_APPENDER_HPP