This file is indexed.

/usr/include/trilinos/Rythmos_ImplicitBDFStepperErrWtVecCalc.hpp is in libtrilinos-rythmos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
//@HEADER
// ***********************************************************************
//
//                           Rythmos Package
//                 Copyright (2006) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact Todd S. Coffey (tscoffe@sandia.gov)
//
// ***********************************************************************
//@HEADER

#ifndef Rythmos_IMPLICITBDF_STEPPER_ERR_WT_VEC_CALC_H
#define Rythmos_IMPLICITBDF_STEPPER_ERR_WT_VEC_CALC_H

#include "Rythmos_ErrWtVecCalcBase.hpp"

namespace Rythmos {

template<class Scalar>
class ImplicitBDFStepperErrWtVecCalc
  : virtual public ErrWtVecCalcBase<Scalar>
{
  public:

    /** \brief . */
    void errWtVecSet(
         Thyra::VectorBase<Scalar>* weight
         ,const Thyra::VectorBase<Scalar>& vector
         ,Scalar relTol
         ,Scalar absTol
         ) const;

    /** \name Overridden from ParameterListAcceptor */
    //@{
    /** \brief . */
    void setParameterList(RCP<Teuchos::ParameterList> const& paramList);

    /** \brief . */
    RCP<Teuchos::ParameterList> getNonconstParameterList();

    /** \brief . */
    RCP<Teuchos::ParameterList> unsetParameterList();

    /** \brief . */
    RCP<const Teuchos::ParameterList> getValidParameters() const;

    //@}

  private:
    RCP<Teuchos::ParameterList> paramList_;
};


template<class Scalar>
void ImplicitBDFStepperErrWtVecCalc<Scalar>::errWtVecSet(
     Thyra::VectorBase<Scalar>* weight
     ,const Thyra::VectorBase<Scalar>& vector
     ,Scalar relTol
     ,Scalar absTol
     ) const
{
  using Teuchos::as;
  using Teuchos::ptrFromRef;
  typedef Teuchos::ScalarTraits<Scalar> ST;
  TEUCHOS_TEST_FOR_EXCEPT(weight==NULL);
  TEUCHOS_TEST_FOR_EXCEPTION(
      ( ( relTol == ST::zero() ) && ( absTol == ST::zero() ) ),
      std::logic_error,
      "Error, relTol and absTol cannot both be zero!\n");
  Thyra::VectorBase<Scalar> &w = *weight;
  Thyra::abs(vector, ptrFromRef(w));
  Vt_S(ptrFromRef(w), relTol);
  Vp_S(ptrFromRef(w), absTol);
  reciprocal(w, ptrFromRef(w));
  Vt_StV(ptrFromRef(w), ST::one(), w); // We square w because of how
                                       // weighted norm_2 is computed.
  // divide by N to get RMS norm
  int N = vector.space()->dim();
  Vt_S(ptrFromRef(w), as<Scalar>(1.0/N));
  // Now you can compute WRMS norm as:
  // Scalar WRMSnorm = norm_2(w,y); // WRMS norm of y with respect to weights w.

  RCP<Teuchos::FancyOStream> out = this->getOStream();
  Teuchos::EVerbosityLevel verbLevel = this->getVerbLevel();
  Teuchos::OSTab ostab(out,1,"errWtVecSet");

  if ( as<int>(verbLevel) >= as<int>(Teuchos::VERB_EXTREME) ) {
    *out << "weight = " << std::endl;
    weight->describe(*out,verbLevel);
  }
}

template<class Scalar>
void ImplicitBDFStepperErrWtVecCalc<Scalar>::setParameterList(
  RCP<Teuchos::ParameterList> const& paramList
  )
{
  TEUCHOS_TEST_FOR_EXCEPT(paramList == Teuchos::null);
  paramList->validateParameters(*this->getValidParameters(),0);
  paramList_ = paramList;
  Teuchos::readVerboseObjectSublist(&*paramList_,this);
}

template<class Scalar>
RCP<Teuchos::ParameterList>
ImplicitBDFStepperErrWtVecCalc<Scalar>::unsetParameterList()
{
  RCP<Teuchos::ParameterList> temp_param_list = paramList_;
  paramList_ = Teuchos::null;
  return(temp_param_list);
}

template<class Scalar>
RCP<Teuchos::ParameterList>
ImplicitBDFStepperErrWtVecCalc<Scalar>::getNonconstParameterList()
{
  return(paramList_);
}

template<class Scalar>
RCP<const Teuchos::ParameterList>
ImplicitBDFStepperErrWtVecCalc<Scalar>::getValidParameters() const
{
  static RCP<Teuchos::ParameterList> validPL;
  if (is_null(validPL)) {
    RCP<Teuchos::ParameterList>
      pl = Teuchos::parameterList();
    Teuchos::setupVerboseObjectSublist(&*pl);
    validPL = pl;
  }
  return (validPL);
}

} // namespace Rythmos

#endif // Rythmos_IMPLICITBDF_STEPPER_ERR_WT_VEC_CALC_H