This file is indexed.

/usr/include/trilinos/ROL_BelosMultiVector.hpp is in libtrilinos-rol-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
// @HEADER
// ************************************************************************
//
//               Rapid Optimization Library (ROL) Package
//                 Copyright (2014) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact lead developers:
//              Drew Kouri   (dpkouri@sandia.gov) and
//              Denis Ridzal (dridzal@sandia.gov)
//
// ************************************************************************
// @HEADER

/**
 * \class ROL::Belos::MultiVector
 * \brief Specializes the Belos::MultiVecTraits to use ROL::MultiVector
 */


#ifndef ROL_BELOS_MULTIVECTOR_HPP
#define ROL_BELOS_MULTIVECTOR_HPP

#include "BelosConfigDefs.hpp"
#include "BelosLinearProblem.hpp"
#include "BelosMultiVecTraits.hpp"
#include "BelosTypes.hpp"

#include "ROL_MultiVector.hpp"

#ifdef HAVE_BELOS_TSQR
namespace { // (anonymous)

  /// \brief Stub TSQR adapter for the ROL::MultiVector specialization of
  ///   Belos::MultiVecTraits.
  ///
  /// This is a stub.  All the methods throw.  The point is to make
  /// everything compile if TSQR is enabled.
  template<class Scalar>
  class RolStubTsqrAdapter {
  public:
    RolStubTsqrAdapter (const Teuchos::RCP<Teuchos::ParameterList>&)
    {
      TEUCHOS_TEST_FOR_EXCEPTION(false, std::logic_error, "Not implemented");
    }

    RolStubTsqrAdapter ()
    {
      TEUCHOS_TEST_FOR_EXCEPTION(false, std::logic_error, "Not implemented");
    }

    Teuchos::RCP<const Teuchos::ParameterList>
    getValidParameters () const
    {
      return Teuchos::rcp (new Teuchos::ParameterList ());
    }

    void
    setParameterList (const Teuchos::RCP<Teuchos::ParameterList>&)
    {}

    void
    factorExplicit (ROL::MultiVector<Scalar>& /* A */,
                    ROL::MultiVector<Scalar>& /* Q */,
                    Teuchos::SerialDenseMatrix<int, Scalar>& /* R */,
                    const bool forceNonnegativeDiagonal = false)
    {
      (void) forceNonnegativeDiagonal; // forestall "unused" warning
      TEUCHOS_TEST_FOR_EXCEPTION(false, std::logic_error, "Not implemented");
    }

    int
    revealRank (ROL::MultiVector<Scalar>& /* Q */,
                Teuchos::SerialDenseMatrix<int, Scalar>& /* R */,
                const typename Teuchos::ScalarTraits<Scalar>::magnitudeType& /* tol */)
    {
      return 0;
    }
  };

} // namespace (anonymous)
#endif // HAVE_BELOS_TSQR

namespace Belos {

    template<class Scalar>
    class MultiVecTraits<Scalar, ROL::MultiVector<Scalar> > {

        typedef ROL::MultiVector<Scalar>  MV;      // ROL::MultiVector object
        typedef Teuchos::RCP<MV>          PMV;     // Pointer to ROL::MultiVector object

        typedef Teuchos::SerialDenseMatrix<int,Scalar> Matrix;

        typedef typename Teuchos::ScalarTraits<Scalar>::magnitudeType magnitudeType;

        public:

            /** \brief Make a new MultiVector containing a specified number of vectors

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV Clone(const MV& mv, const int numVecs) {
                return mv.clone(numVecs);
            }


            /** \brief Make a new MultiVector of the same size and containing a deep copy
                of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneCopy(const MV& mv) {
                return mv.deepCopy();
            }

            /** \brief Make a new MultiVector containing a deep copy of specified columns
                of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneCopy(const MV& mv, const std::vector<int>& index) {
                return mv.deepCopy(index);
            }

            /** \brief Make a new MultiVector containing a deep copy of specified
                contiguous block of columns of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneCopy(const MV& mv, const Teuchos::Range1D& index) {
                int n = index.size();
                int l = index.lbound();

                std::vector<int> stdex(n);
                for( int i=0; i<n; ++i ) {
                    stdex[i] = l+i;
                }

                return mv.deepCopy(stdex);
            }

            /** \brief Make a new MultiVector containing pointers to specified
                columns of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneViewNonConst(MV& mv, const std::vector<int>& index) {
                return mv.shallowCopy(index);
            }


            /** \brief Make a new MultiVector containing pointers to a contiguous
                block of columns of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneViewNonConst(MV& mv, const Teuchos::Range1D& index) {
                int n = index.size();
                int l = index.lbound();

                std::vector<int> stdex(n);
                for( int i=0; i<n; ++i ) {
                    stdex[i] = l+i;
                }

                return mv.shallowCopy(stdex);
            }

            /** \brief Make a new const MultiVector containing pointers to specified
                columns of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneView(const MV& mv, const std::vector<int>& index) {
                return mv.shallowCopyConst(index);
            }

            /** \brief Make a new const MultiVector containing pointers to a contiguous
                block of columns of the original MultiVector's data

                @return A reference-counted pointer to the cloned MultiVector
            */
            static PMV CloneView(const MV& mv, const Teuchos::Range1D& index) {
                int n = index.size();
                int l = index.lbound();

                std::vector<int> stdex(n);
                for( int i=0; i<n; ++i ) {
                    stdex[i] = l+i;
                }

                return mv.shallowCopyConst(stdex);
            }


            /** \brief Get length of the columns of the MultiVector

                @return Vector length
            */
            static ptrdiff_t GetGlobalLength(const MV& mv) {
                return mv.getLength();
            }

            /** \brief Return the number of vectors in the MultiVector
            */
            static int GetNumberVecs(const MV& mv) {
                return mv.getNumberOfVectors();
            }

            /// \brief Stride is undefined for ROL::Vector
            static bool HasConstantStride(const MV& mv) {
                return false;
            }

            /** \brief Replace mv with \f$\alpha AB+\beta mv\f$
            */
            static void MvTimesMatAddMv(Scalar alpha, const MV& A,
                                        const Matrix& B, Scalar beta, MV& mv) {
                mv.gemm(alpha,A,B,beta);
            }


            static void MvAddMv(Scalar alpha, const MV& A,
                                Scalar beta,  const MV& B, MV& mv) {

                mv.set(A);
                mv.scale(alpha);
                mv.axpy(beta,B);
            }

            /** \brief Scale every element in the MultiVector by alpha
            */
            static void MvScale(MV& mv, Scalar alpha) {
                mv.scale(alpha);
            }

            /** \brief Scale the columns of the MultiVector by the values in alpha
            */
            static void MvScale(MV& mv, const std::vector<Scalar>& alphas) {
                mv.scale(alphas);
            }

            /** \brief Compute \f$\alpha A^\top B$\f$ and store the result in
                       the matrix\f$C\f$
            */
            static void MvTransMv(const Scalar alpha, const MV& A,
                                  const MV& B, Matrix& C) {
                B.innerProducts(alpha,A,C);
            }

            /** \brief Compute the columnwise dot products of A and B and store the
                       result in dots
            */
            static void MvDot(const MV& A, const MV& B, std::vector<Scalar> &dots) {
                A.dots(B,dots);
            }

            /** \brief Compute the columnwise norms of mv and store the
                       result in dots
            */
            static void MvNorm(const MV& mv,
                               std::vector<magnitudeType>& normvec,
                               NormType type=TwoNorm) {

                TEUCHOS_TEST_FOR_EXCEPTION( (type !=TwoNorm) , std::invalid_argument,
                    "Belos::MultiVecTraits<Scalar,ROL::MultiVector<Scalar> >::MvNorm()\n"
                    "ROL::MultiVector supports only Euclidean norm");

                mv.norms(normvec);

            }

            /** \brief Copy the specified columns of A into mv
            */
            static void SetBlock(const MV& A, const std::vector<int>& index, MV& mv) {
                mv.set(A,index);
            }

            /** \brief Copy the contiguous block of columns of A into mv
            */
            static void SetBlock(const MV& A, Teuchos::Range1D& index, MV& mv) {
                int n = index.size();
                int l = index.lbound();

                std::vector<int> stdex(n);
                for( int i=0; i<n; ++i ) {
                    stdex[i] = l+i;
                }
                mv.set(A,stdex);
            }

            /** \brief Copy the columns of A into mv
            */
            static void Assign(const MV& A, MV& mv) {
                mv.set(A);
            }

            /** \brief Randomize the vectors in mv (not implemented)
            */
            static void MvRandom(MV& mv) {
                TEUCHOS_TEST_FOR_EXCEPTION(true,std::logic_error,
                    "Belos::MultiVecTraits<Scalar,ROL::MultiVector<Scalar> >::Random()\n"
                    "Random initialization not implemented for ROL::MultiVector");
            }


            static void MvInit(MV& mv,
                               const Scalar alpha = Teuchos::ScalarTraits<Scalar>::zero()) {
                TEUCHOS_TEST_FOR_EXCEPTION(alpha != 0,std::invalid_argument,
                    "Belos::MultiVecTraits<Scalar,ROL::MultiVector<Scalar> >::MvInit()\n");
                mv.zero();
            }


            static void MvPrint(const MV& mv, std::ostream& os) {
                TEUCHOS_TEST_FOR_EXCEPTION(true,std::logic_error,
                    "Belos::MultiVecTraits<Scalar,ROL::MultiVector<Scalar> >::MvPrint()\n"
                    "Print not implemented for ROL::MultiVector");
            }

#ifdef HAVE_BELOS_TSQR
      /// \typedef tsqr_adaptor_type
      /// \brief TsqrAdaptor specialization for ROL::MultiVector
      typedef RolStubTsqrAdapter<Scalar> tsqr_adaptor_type;
#endif // HAVE_BELOS_TSQR

    };
}


#endif