This file is indexed.

/usr/include/trilinos/Kokkos_Parallel.hpp is in libtrilinos-kokkos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
/*
//@HEADER
// ************************************************************************
// 
//                        Kokkos v. 2.0
//              Copyright (2014) Sandia Corporation
// 
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
// 
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact  H. Carter Edwards (hcedwar@sandia.gov)
// 
// ************************************************************************
//@HEADER
*/

/// \file Kokkos_Parallel.hpp
/// \brief Declaration of parallel operators

#ifndef KOKKOS_PARALLEL_HPP
#define KOKKOS_PARALLEL_HPP

#include <cstddef>
#include <Kokkos_Core_fwd.hpp>
#include <Kokkos_View.hpp>
#include <Kokkos_ExecPolicy.hpp>

#if (KOKKOS_ENABLE_PROFILING)
#include <impl/Kokkos_Profiling_Interface.hpp>
#include <typeinfo>
#endif

#include <impl/Kokkos_Tags.hpp>
#include <impl/Kokkos_Traits.hpp>
#include <impl/Kokkos_FunctorAdapter.hpp>

#ifdef KOKKOS_HAVE_DEBUG
#include<iostream>
#endif

//----------------------------------------------------------------------------
//----------------------------------------------------------------------------

namespace Kokkos {
namespace Impl {

//----------------------------------------------------------------------------
/** \brief  Given a Functor and Execution Policy query an execution space.
 *
 *  if       the Policy has an execution space use that
 *  else if  the Functor has an execution_space use that
 *  else if  the Functor has a device_type use that for backward compatibility
 *  else     use the default
 */
template< class Functor
        , class Policy
        , class EnableFunctor
        , class EnablePolicy
        >
struct FunctorPolicyExecutionSpace {
  typedef Kokkos::DefaultExecutionSpace execution_space ;
};

template< class Functor , class Policy >
struct FunctorPolicyExecutionSpace
  < Functor , Policy
  , typename enable_if_type< typename Functor::device_type     >::type
  , typename enable_if_type< typename Policy ::execution_space >::type
  >
{
  typedef typename Policy ::execution_space execution_space ;
};

template< class Functor , class Policy >
struct FunctorPolicyExecutionSpace
  < Functor , Policy
  , typename enable_if_type< typename Functor::execution_space >::type
  , typename enable_if_type< typename Policy ::execution_space >::type
  >
{
  typedef typename Policy ::execution_space execution_space ;
};

template< class Functor , class Policy , class EnableFunctor >
struct FunctorPolicyExecutionSpace
  < Functor , Policy
  , EnableFunctor
  , typename enable_if_type< typename Policy::execution_space >::type
  >
{
  typedef typename Policy ::execution_space execution_space ;
};

template< class Functor , class Policy , class EnablePolicy >
struct FunctorPolicyExecutionSpace
  < Functor , Policy
  , typename enable_if_type< typename Functor::device_type >::type
  , EnablePolicy
  >
{
  typedef typename Functor::device_type execution_space ;
};

template< class Functor , class Policy , class EnablePolicy >
struct FunctorPolicyExecutionSpace
  < Functor , Policy
  , typename enable_if_type< typename Functor::execution_space >::type
  , EnablePolicy
  >
{
  typedef typename Functor::execution_space execution_space ;
};

} // namespace Impl
} // namespace Kokkos

//----------------------------------------------------------------------------
//----------------------------------------------------------------------------

namespace Kokkos {

/** \brief Execute \c functor in parallel according to the execution \c policy.
 *
 * A "functor" is a class containing the function to execute in parallel,
 * data needed for that execution, and an optional \c execution_space
 * typedef.  Here is an example functor for parallel_for:
 *
 * \code
 *  class FunctorType {
 *  public:
 *    typedef  ...  execution_space ;
 *    void operator() ( WorkType iwork ) const ;
 *  };
 * \endcode
 *
 * In the above example, \c WorkType is any integer type for which a
 * valid conversion from \c size_t to \c IntType exists.  Its
 * <tt>operator()</tt> method defines the operation to parallelize,
 * over the range of integer indices <tt>iwork=[0,work_count-1]</tt>.
 * This compares to a single iteration \c iwork of a \c for loop.
 * If \c execution_space is not defined DefaultExecutionSpace will be used.
 */
template< class ExecPolicy , class FunctorType >
inline
void parallel_for( const ExecPolicy  & policy
                 , const FunctorType & functor
                 , const std::string& str = ""
                 , typename Impl::enable_if< ! Impl::is_integral< ExecPolicy >::value >::type * = 0
                 )
{
#if (KOKKOS_ENABLE_PROFILING)
    uint64_t kpID = 0;
     if(Kokkos::Profiling::profileLibraryLoaded()) {
     	Kokkos::Profiling::beginParallelFor("" == str ? typeid(FunctorType).name() : str, 0, &kpID);
     }
#endif

    Kokkos::Impl::shared_allocation_tracking_claim_and_disable();
    Impl::ParallelFor< FunctorType , ExecPolicy > closure( functor , policy );
    Kokkos::Impl::shared_allocation_tracking_release_and_enable();
   
   closure.execute();

#if (KOKKOS_ENABLE_PROFILING)
     if(Kokkos::Profiling::profileLibraryLoaded()) {
        Kokkos::Profiling::endParallelFor(kpID);
     }
#endif
}

template< class FunctorType >
inline
void parallel_for( const size_t        work_count
                 , const FunctorType & functor
                 , const std::string& str = ""
                 )
{
  typedef typename
    Impl::FunctorPolicyExecutionSpace< FunctorType , void >::execution_space
      execution_space ;
  typedef RangePolicy< execution_space > policy ;

#if (KOKKOS_ENABLE_PROFILING)
  uint64_t kpID = 0;
     if(Kokkos::Profiling::profileLibraryLoaded()) {
  	Kokkos::Profiling::beginParallelFor("" == str ? typeid(FunctorType).name() : str, 0, &kpID);
     }
#endif
    
  Kokkos::Impl::shared_allocation_tracking_claim_and_disable();
  Impl::ParallelFor< FunctorType , policy > closure( functor , policy(0,work_count) );
  Kokkos::Impl::shared_allocation_tracking_release_and_enable();

  closure.execute();

#if (KOKKOS_ENABLE_PROFILING)
     if(Kokkos::Profiling::profileLibraryLoaded()) {
	Kokkos::Profiling::endParallelFor(kpID);
     }
#endif
}

template< class ExecPolicy , class FunctorType >
inline
void parallel_for( const std::string & str
                 , const ExecPolicy  & policy
                 , const FunctorType & functor )
{
  #if KOKKOS_ENABLE_DEBUG_PRINT_KERNEL_NAMES
  Kokkos::fence();
  std::cout << "KOKKOS_DEBUG Start parallel_for kernel: " << str << std::endl;
  #endif

  parallel_for(policy,functor,str);

  #if KOKKOS_ENABLE_DEBUG_PRINT_KERNEL_NAMES
  Kokkos::fence();
  std::cout << "KOKKOS_DEBUG End   parallel_for kernel: " << str << std::endl;
  #endif
  (void) str;
}

}

#include <Kokkos_Parallel_Reduce.hpp>
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------

namespace Kokkos {

/// \fn parallel_scan
/// \tparam ExecutionPolicy The execution policy type.
/// \tparam FunctorType     The scan functor type.
///
/// \param policy  [in] The execution policy.
/// \param functor [in] The scan functor.
///
/// This function implements a parallel scan pattern.  The scan can
/// be either inclusive or exclusive, depending on how you implement
/// the scan functor.
///
/// A scan functor looks almost exactly like a reduce functor, except
/// that its operator() takes a third \c bool argument, \c final_pass,
/// which indicates whether this is the last pass of the scan
/// operation.  We will show below how to use the \c final_pass
/// argument to control whether the scan is inclusive or exclusive.
///
/// Here is the minimum required interface of a scan functor for a POD
/// (plain old data) value type \c PodType.  That is, the result is a
/// View of zero or more PodType.  It is also possible for the result
/// to be an array of (same-sized) arrays of PodType, but we do not
/// show the required interface for that here.
/// \code
/// template< class ExecPolicy , class FunctorType >
/// class ScanFunctor {
/// public:
///   // The Kokkos device type
///   typedef ... execution_space;
///   // Type of an entry of the array containing the result;
///   // also the type of each of the entries combined using
///   // operator() or join().
///   typedef PodType value_type;
///
///   void operator () (const ExecPolicy::member_type & i, value_type& update, const bool final_pass) const;
///   void init (value_type& update) const;
///   void join (volatile value_type& update, volatile const value_type& input) const
/// };
/// \endcode
///
/// Here is an example of a functor which computes an inclusive plus-scan
/// of an array of \c int, in place.  If given an array [1, 2, 3, 4], this
/// scan will overwrite that array with [1, 3, 6, 10].
///
/// \code
/// template<class SpaceType>
/// class InclScanFunctor {
/// public:
///   typedef SpaceType execution_space;
///   typedef int value_type;
///   typedef typename SpaceType::size_type size_type;
///
///   InclScanFunctor( Kokkos::View<value_type*, execution_space> x
///                  , Kokkos::View<value_type*, execution_space> y ) : m_x(x), m_y(y) {}
///
///   void operator () (const size_type i, value_type& update, const bool final_pass) const {
///     update += m_x(i);
///     if (final_pass) {
///       m_y(i) = update;
///     }
///   }
///   void init (value_type& update) const {
///     update = 0;
///   }
///   void join (volatile value_type& update, volatile const value_type& input) const {
///     update += input;
///   }
///
/// private:
///   Kokkos::View<value_type*, execution_space> m_x;
///   Kokkos::View<value_type*, execution_space> m_y;
/// };
/// \endcode
///
/// Here is an example of a functor which computes an <i>exclusive</i>
/// scan of an array of \c int, in place.  In operator(), note both
/// that the final_pass test and the update have switched places, and
/// the use of a temporary.  If given an array [1, 2, 3, 4], this scan
/// will overwrite that array with [0, 1, 3, 6].
///
/// \code
/// template<class SpaceType>
/// class ExclScanFunctor {
/// public:
///   typedef SpaceType execution_space;
///   typedef int value_type;
///   typedef typename SpaceType::size_type size_type;
///
///   ExclScanFunctor (Kokkos::View<value_type*, execution_space> x) : x_ (x) {}
///
///   void operator () (const size_type i, value_type& update, const bool final_pass) const {
///     const value_type x_i = x_(i);
///     if (final_pass) {
///       x_(i) = update;
///     }
///     update += x_i;
///   }
///   void init (value_type& update) const {
///     update = 0;
///   }
///   void join (volatile value_type& update, volatile const value_type& input) const {
///     update += input;
///   }
///
/// private:
///   Kokkos::View<value_type*, execution_space> x_;
/// };
/// \endcode
///
/// Here is an example of a functor which builds on the above
/// exclusive scan example, to compute an offsets array from a
/// population count array, in place.  We assume that the pop count
/// array has an extra entry at the end to store the final count.  If
/// given an array [1, 2, 3, 4, 0], this scan will overwrite that
/// array with [0, 1, 3, 6, 10].
///
/// \code
/// template<class SpaceType>
/// class OffsetScanFunctor {
/// public:
///   typedef SpaceType execution_space;
///   typedef int value_type;
///   typedef typename SpaceType::size_type size_type;
///
///   // lastIndex_ is the last valid index (zero-based) of x.
///   // If x has length zero, then lastIndex_ won't be used anyway.
///   OffsetScanFunctor( Kokkos::View<value_type*, execution_space> x
///                    , Kokkos::View<value_type*, execution_space> y )
///      : m_x(x), m_y(y), last_index_ (x.dimension_0 () == 0 ? 0 : x.dimension_0 () - 1)
///   {}
///
///   void operator () (const size_type i, int& update, const bool final_pass) const {
///     if (final_pass) {
///       m_y(i) = update;
///     }
///     update += m_x(i);
///     // The last entry of m_y gets the final sum.
///     if (final_pass && i == last_index_) {
///       m_y(i+1) = update;
///     }
///   }
///   void init (value_type& update) const {
///     update = 0;
///   }
///   void join (volatile value_type& update, volatile const value_type& input) const {
///     update += input;
///   }
///
/// private:
///   Kokkos::View<value_type*, execution_space> m_x;
///   Kokkos::View<value_type*, execution_space> m_y;
///   const size_type last_index_;
/// };
/// \endcode
///
template< class ExecutionPolicy , class FunctorType >
inline
void parallel_scan( const ExecutionPolicy & policy
                  , const FunctorType     & functor
                  , const std::string& str = ""
                  , typename Impl::enable_if< ! Impl::is_integral< ExecutionPolicy >::value >::type * = 0
                  )
{
#if (KOKKOS_ENABLE_PROFILING)
  uint64_t kpID = 0;
     if(Kokkos::Profiling::profileLibraryLoaded()) {
	Kokkos::Profiling::beginParallelScan("" == str ? typeid(FunctorType).name() : str, 0, &kpID);
     }
#endif

  Kokkos::Impl::shared_allocation_tracking_claim_and_disable();
  Impl::ParallelScan< FunctorType , ExecutionPolicy > closure( functor , policy );
  Kokkos::Impl::shared_allocation_tracking_release_and_enable();

  closure.execute();

#if (KOKKOS_ENABLE_PROFILING)
     if(Kokkos::Profiling::profileLibraryLoaded()) {
	Kokkos::Profiling::endParallelScan(kpID);
     }
#endif

}

template< class FunctorType >
inline
void parallel_scan( const size_t        work_count
                  , const FunctorType & functor
                  , const std::string& str = "" )
{
  typedef typename
    Kokkos::Impl::FunctorPolicyExecutionSpace< FunctorType , void >::execution_space
      execution_space ;

  typedef Kokkos::RangePolicy< execution_space > policy ;

#if (KOKKOS_ENABLE_PROFILING)
  uint64_t kpID = 0;
     if(Kokkos::Profiling::profileLibraryLoaded()) {
	Kokkos::Profiling::beginParallelScan("" == str ? typeid(FunctorType).name() : str, 0, &kpID);
     }
#endif
    
  Kokkos::Impl::shared_allocation_tracking_claim_and_disable();
  Impl::ParallelScan< FunctorType , policy > closure( functor , policy(0,work_count) );
  Kokkos::Impl::shared_allocation_tracking_release_and_enable();

  closure.execute();

#if (KOKKOS_ENABLE_PROFILING)
     if(Kokkos::Profiling::profileLibraryLoaded()) {
	Kokkos::Profiling::endParallelScan(kpID);
     }
#endif

}

template< class ExecutionPolicy , class FunctorType >
inline
void parallel_scan( const std::string& str
                  , const ExecutionPolicy & policy
                  , const FunctorType     & functor)
{
  #if KOKKOS_ENABLE_DEBUG_PRINT_KERNEL_NAMES
  Kokkos::fence();
  std::cout << "KOKKOS_DEBUG Start parallel_scan kernel: " << str << std::endl;
  #endif

  parallel_scan(policy,functor,str);

  #if KOKKOS_ENABLE_DEBUG_PRINT_KERNEL_NAMES
  Kokkos::fence();
  std::cout << "KOKKOS_DEBUG End   parallel_scan kernel: " << str << std::endl;
  #endif
  (void) str;
}

} // namespace Kokkos

//----------------------------------------------------------------------------
//----------------------------------------------------------------------------

namespace Kokkos {
namespace Impl {

template< class FunctorType , class Enable = void >
struct FunctorTeamShmemSize
{
  KOKKOS_INLINE_FUNCTION static size_t value( const FunctorType & , int ) { return 0 ; }
};

template< class FunctorType >
struct FunctorTeamShmemSize< FunctorType , typename Impl::enable_if< 0 < sizeof( & FunctorType::team_shmem_size ) >::type >
{
  static inline size_t value( const FunctorType & f , int team_size ) { return f.team_shmem_size( team_size ) ; }
};

template< class FunctorType >
struct FunctorTeamShmemSize< FunctorType , typename Impl::enable_if< 0 < sizeof( & FunctorType::shmem_size ) >::type >
{
  static inline size_t value( const FunctorType & f , int team_size ) { return f.shmem_size( team_size ) ; }
};

} // namespace Impl
} // namespace Kokkos

//----------------------------------------------------------------------------
//----------------------------------------------------------------------------

#endif /* KOKKOS_PARALLEL_HPP */