/usr/include/trilinos/Ifpack2_OverlappingRowMatrix_def.hpp is in libtrilinos-ifpack2-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 | /*@HEADER
// ***********************************************************************
//
// Ifpack2: Tempated Object-Oriented Algebraic Preconditioner Package
// Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/
#ifndef IFPACK2_OVERLAPPINGROWMATRIX_DEF_HPP
#define IFPACK2_OVERLAPPINGROWMATRIX_DEF_HPP
#include <Ifpack2_OverlappingRowMatrix_decl.hpp>
#include <Ifpack2_Details_OverlappingRowGraph.hpp>
#include <Tpetra_CrsMatrix.hpp>
#include <Teuchos_CommHelpers.hpp>
namespace Ifpack2 {
template<class MatrixType>
OverlappingRowMatrix<MatrixType>::
OverlappingRowMatrix (const Teuchos::RCP<const row_matrix_type>& A,
const int overlapLevel) :
A_ (A),
OverlapLevel_ (overlapLevel)
{
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::Array;
using Teuchos::outArg;
using Teuchos::rcp_const_cast;
using Teuchos::rcp_dynamic_cast;
using Teuchos::rcp_implicit_cast;
using Teuchos::REDUCE_SUM;
using Teuchos::reduceAll;
typedef Tpetra::global_size_t GST;
typedef Tpetra::CrsGraph<local_ordinal_type,
global_ordinal_type, node_type> crs_graph_type;
TEUCHOS_TEST_FOR_EXCEPTION(
OverlapLevel_ <= 0, std::runtime_error,
"Ifpack2::OverlappingRowMatrix: OverlapLevel must be > 0.");
TEUCHOS_TEST_FOR_EXCEPTION(
A_->getComm()->getSize() == 1, std::runtime_error,
"Ifpack2::OverlappingRowMatrix: Matrix must be "
"distributed over more than one MPI process.");
RCP<const crs_matrix_type> ACRS =
rcp_dynamic_cast<const crs_matrix_type, const row_matrix_type> (A_);
TEUCHOS_TEST_FOR_EXCEPTION(
ACRS.is_null (), std::runtime_error,
"Ifpack2::OverlappingRowMatrix: The input matrix must be a Tpetra::"
"CrsMatrix with matching template parameters. This class currently "
"requires that CrsMatrix's fifth template parameter be the default.");
RCP<const crs_graph_type> A_crsGraph = ACRS->getCrsGraph ();
const size_t numMyRowsA = A_->getNodeNumRows ();
const global_ordinal_type global_invalid =
Teuchos::OrdinalTraits<global_ordinal_type>::invalid ();
// Temp arrays
Array<global_ordinal_type> ExtElements;
RCP<map_type> TmpMap;
RCP<crs_graph_type> TmpGraph;
RCP<import_type> TmpImporter;
RCP<const map_type> RowMap, ColMap;
// The big import loop
for (int overlap = 0 ; overlap < OverlapLevel_ ; ++overlap) {
// Get the current maps
if (overlap == 0) {
RowMap = A_->getRowMap ();
ColMap = A_->getColMap ();
}
else {
RowMap = TmpGraph->getRowMap ();
ColMap = TmpGraph->getColMap ();
}
const size_t size = ColMap->getNodeNumElements () - RowMap->getNodeNumElements ();
Array<global_ordinal_type> mylist (size);
size_t count = 0;
// define the set of rows that are in ColMap but not in RowMap
for (local_ordinal_type i = 0 ; (size_t) i < ColMap->getNodeNumElements() ; ++i) {
const global_ordinal_type GID = ColMap->getGlobalElement (i);
if (A_->getRowMap ()->getLocalElement (GID) == global_invalid) {
typedef typename Array<global_ordinal_type>::iterator iter_type;
const iter_type end = ExtElements.end ();
const iter_type pos = std::find (ExtElements.begin (), end, GID);
if (pos == end) {
ExtElements.push_back (GID);
mylist[count] = GID;
++count;
}
}
}
// mfh 24 Nov 2013: We don't need TmpMap, TmpGraph, or
// TmpImporter after this loop, so we don't have to construct them
// on the last round.
if (overlap + 1 < OverlapLevel_) {
// Allocate & import new matrices, maps, etc.
//
// FIXME (mfh 24 Nov 2013) Do we always want to use index base
// zero? It doesn't really matter, since the actual index base
// (in the current implementation of Map) will always be the
// globally least GID.
TmpMap = rcp (new map_type (global_invalid, mylist (0, count),
Teuchos::OrdinalTraits<global_ordinal_type>::zero (),
A_->getComm (), A_->getNode ()));
TmpGraph = rcp (new crs_graph_type (TmpMap, 0));
TmpImporter = rcp (new import_type (A_->getRowMap (), TmpMap));
TmpGraph->doImport (*A_crsGraph, *TmpImporter, Tpetra::INSERT);
TmpGraph->fillComplete (A_->getDomainMap (), TmpMap);
}
}
// build the map containing all the nodes (original
// matrix + extended matrix)
Array<global_ordinal_type> mylist (numMyRowsA + ExtElements.size ());
for (local_ordinal_type i = 0; (size_t)i < numMyRowsA; ++i) {
mylist[i] = A_->getRowMap ()->getGlobalElement (i);
}
for (local_ordinal_type i = 0; i < ExtElements.size (); ++i) {
mylist[i + numMyRowsA] = ExtElements[i];
}
RowMap_ = rcp (new map_type (global_invalid, mylist (),
Teuchos::OrdinalTraits<global_ordinal_type>::zero (),
A_->getComm (), A_->getNode ()));
ColMap_ = RowMap_;
// now build the map corresponding to all the external nodes
// (with respect to A().RowMatrixRowMap().
ExtMap_ = rcp (new map_type (global_invalid, ExtElements (),
Teuchos::OrdinalTraits<global_ordinal_type>::zero (),
A_->getComm (), A_->getNode ()));
ExtMatrix_ = rcp (new crs_matrix_type (ExtMap_, ColMap_, 0));
ExtImporter_ = rcp (new import_type (A_->getRowMap (), ExtMap_));
RCP<crs_matrix_type> ExtMatrixCRS =
rcp_dynamic_cast<crs_matrix_type, row_matrix_type> (ExtMatrix_);
ExtMatrixCRS->doImport (*ACRS, *ExtImporter_, Tpetra::INSERT);
ExtMatrixCRS->fillComplete (A_->getDomainMap (), RowMap_);
Importer_ = rcp (new import_type (A_->getRowMap (), RowMap_));
// fix indices for overlapping matrix
const size_t numMyRowsB = ExtMatrix_->getNodeNumRows ();
GST NumMyNonzeros_tmp = A_->getNodeNumEntries () + ExtMatrix_->getNodeNumEntries ();
GST NumMyRows_tmp = numMyRowsA + numMyRowsB;
{
GST inArray[2], outArray[2];
inArray[0] = NumMyNonzeros_tmp;
inArray[1] = NumMyRows_tmp;
outArray[0] = 0;
outArray[1] = 0;
reduceAll<int, GST> (* (A_->getComm ()), REDUCE_SUM, 2, inArray, outArray);
NumGlobalNonzeros_ = outArray[0];
NumGlobalRows_ = outArray[1];
}
// reduceAll<int, GST> (* (A_->getComm ()), REDUCE_SUM, NumMyNonzeros_tmp,
// outArg (NumGlobalNonzeros_));
// reduceAll<int, GST> (* (A_->getComm ()), REDUCE_SUM, NumMyRows_tmp,
// outArg (NumGlobalRows_));
MaxNumEntries_ = A_->getNodeMaxNumRowEntries ();
if (MaxNumEntries_ < ExtMatrix_->getNodeMaxNumRowEntries ()) {
MaxNumEntries_ = ExtMatrix_->getNodeMaxNumRowEntries ();
}
// Create the graph (returned by getGraph()).
typedef Details::OverlappingRowGraph<row_graph_type> row_graph_impl_type;
RCP<row_graph_impl_type> graph =
rcp (new row_graph_impl_type (A_->getGraph (),
ExtMatrix_->getGraph (),
RowMap_,
ColMap_,
NumGlobalRows_,
NumGlobalRows_, // # global cols == # global rows
NumGlobalNonzeros_,
MaxNumEntries_,
rcp_const_cast<const import_type> (Importer_),
rcp_const_cast<const import_type> (ExtImporter_)));
graph_ = rcp_const_cast<const row_graph_type> (rcp_implicit_cast<row_graph_type> (graph));
// Resize temp arrays
Indices_.resize (MaxNumEntries_);
Values_.resize (MaxNumEntries_);
}
template<class MatrixType>
OverlappingRowMatrix<MatrixType>::~OverlappingRowMatrix() {}
template<class MatrixType>
Teuchos::RCP<const Teuchos::Comm<int> >
OverlappingRowMatrix<MatrixType>::getComm () const
{
return A_->getComm ();
}
template<class MatrixType>
Teuchos::RCP<typename MatrixType::node_type>
OverlappingRowMatrix<MatrixType>::getNode () const
{
return A_->getNode();
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getRowMap () const
{
// FIXME (mfh 12 July 2013) Is this really the right Map to return?
return RowMap_;
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getColMap () const
{
// FIXME (mfh 12 July 2013) Is this really the right Map to return?
return ColMap_;
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getDomainMap () const
{
// The original matrix's domain map is irrelevant; we want the map associated
// with the overlap. This can then be used by LocalFilter, for example, while
// letting LocalFilter still filter based on domain and range maps (instead of
// column and row maps).
// FIXME Ideally, this would be the same map but restricted to a local
// communicator. If replaceCommWithSubset were free, that would be the way to
// go. That would require a new Map ctor. For now, we'll stick with ColMap_'s
// global communicator.
return ColMap_;
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getRangeMap () const
{
return RowMap_;
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::RowGraph<typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getGraph() const
{
return graph_;
}
template<class MatrixType>
global_size_t OverlappingRowMatrix<MatrixType>::getGlobalNumRows() const
{
return NumGlobalRows_;
}
template<class MatrixType>
global_size_t OverlappingRowMatrix<MatrixType>::getGlobalNumCols() const
{
return NumGlobalRows_;
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getNodeNumRows() const
{
return A_->getNodeNumRows () + ExtMatrix_->getNodeNumRows ();
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getNodeNumCols() const
{
return this->getNodeNumRows ();
}
template<class MatrixType>
typename MatrixType::global_ordinal_type
OverlappingRowMatrix<MatrixType>::getIndexBase () const
{
return A_->getIndexBase();
}
template<class MatrixType>
Tpetra::global_size_t OverlappingRowMatrix<MatrixType>::getGlobalNumEntries() const
{
return NumGlobalNonzeros_;
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getNodeNumEntries() const
{
return A_->getNodeNumEntries () + ExtMatrix_->getNodeNumEntries ();
}
template<class MatrixType>
size_t
OverlappingRowMatrix<MatrixType>::
getNumEntriesInGlobalRow (global_ordinal_type globalRow) const
{
const local_ordinal_type localRow = RowMap_->getLocalElement (globalRow);
if (localRow == Teuchos::OrdinalTraits<local_ordinal_type>::invalid ()) {
return Teuchos::OrdinalTraits<size_t>::invalid();
} else {
return getNumEntriesInLocalRow (localRow);
}
}
template<class MatrixType>
size_t
OverlappingRowMatrix<MatrixType>::
getNumEntriesInLocalRow (local_ordinal_type localRow) const
{
using Teuchos::as;
const size_t numMyRowsA = A_->getNodeNumRows ();
if (as<size_t> (localRow) < numMyRowsA) {
return A_->getNumEntriesInLocalRow (localRow);
} else {
return ExtMatrix_->getNumEntriesInLocalRow (as<local_ordinal_type> (localRow - numMyRowsA));
}
}
template<class MatrixType>
global_size_t OverlappingRowMatrix<MatrixType>::getGlobalNumDiags() const
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix::getGlobalNumDiags() not supported.");
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getNodeNumDiags() const
{
return A_->getNodeNumDiags();
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getGlobalMaxNumRowEntries() const
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix::getGlobalMaxNumRowEntries() not supported.");
}
template<class MatrixType>
size_t OverlappingRowMatrix<MatrixType>::getNodeMaxNumRowEntries() const
{
return MaxNumEntries_;
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::hasColMap() const
{
return true;
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::isLowerTriangular() const
{
return A_->isLowerTriangular();
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::isUpperTriangular() const
{
return A_->isUpperTriangular();
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::isLocallyIndexed() const
{
return true;
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::isGloballyIndexed() const
{
return false;
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::isFillComplete() const
{
return true;
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
getGlobalRowCopy (global_ordinal_type GlobalRow,
const Teuchos::ArrayView<global_ordinal_type> &Indices,
const Teuchos::ArrayView<scalar_type>& Values,
size_t& NumEntries) const
{
const local_ordinal_type LocalRow = RowMap_->getLocalElement (GlobalRow);
if (LocalRow == Teuchos::OrdinalTraits<local_ordinal_type>::invalid ()) {
NumEntries = Teuchos::OrdinalTraits<size_t>::invalid ();
} else {
if (Teuchos::as<size_t> (LocalRow) < A_->getNodeNumRows ()) {
A_->getGlobalRowCopy (GlobalRow, Indices, Values, NumEntries);
} else {
ExtMatrix_->getGlobalRowCopy (GlobalRow, Indices, Values, NumEntries);
}
}
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
getLocalRowCopy (local_ordinal_type LocalRow,
const Teuchos::ArrayView<local_ordinal_type> &Indices,
const Teuchos::ArrayView<scalar_type> &Values,
size_t &NumEntries) const
{
using Teuchos::as;
const size_t numMyRowsA = A_->getNodeNumRows ();
if (as<size_t> (LocalRow) < numMyRowsA) {
A_->getLocalRowCopy (LocalRow, Indices, Values, NumEntries);
} else {
ExtMatrix_->getLocalRowCopy (LocalRow - as<local_ordinal_type> (numMyRowsA),
Indices, Values, NumEntries);
}
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
getGlobalRowView (global_ordinal_type GlobalRow,
Teuchos::ArrayView<const global_ordinal_type>& indices,
Teuchos::ArrayView<const scalar_type>& values) const
{
const local_ordinal_type LocalRow = RowMap_->getLocalElement (GlobalRow);
if (LocalRow == Teuchos::OrdinalTraits<local_ordinal_type>::invalid()) {
indices = Teuchos::null;
values = Teuchos::null;
} else {
if (Teuchos::as<size_t> (LocalRow) < A_->getNodeNumRows ()) {
A_->getGlobalRowView (GlobalRow, indices, values);
} else {
ExtMatrix_->getGlobalRowView (GlobalRow, indices, values);
}
}
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
getLocalRowView (local_ordinal_type LocalRow,
Teuchos::ArrayView<const local_ordinal_type>& indices,
Teuchos::ArrayView<const scalar_type>& values) const
{
using Teuchos::as;
const size_t numMyRowsA = A_->getNodeNumRows ();
if (as<size_t> (LocalRow) < numMyRowsA) {
A_->getLocalRowView (LocalRow, indices, values);
} else {
ExtMatrix_->getLocalRowView (LocalRow - as<local_ordinal_type> (numMyRowsA),
indices, values);
}
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
getLocalDiagCopy (Tpetra::Vector<scalar_type,local_ordinal_type,global_ordinal_type,node_type>& diag) const
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix::getLocalDiagCopy not supported.");
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
leftScale (const Tpetra::Vector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& x)
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix does not support leftScale.");
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
rightScale (const Tpetra::Vector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& x)
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix does not support leftScale.");
}
template<class MatrixType>
typename OverlappingRowMatrix<MatrixType>::mag_type
OverlappingRowMatrix<MatrixType>::getFrobeniusNorm () const
{
throw std::runtime_error("Ifpack2::OverlappingRowMatrix does not support getFrobeniusNorm.");
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
apply (const Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &X,
Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &Y,
Teuchos::ETransp mode,
scalar_type alpha,
scalar_type beta) const
{
using Teuchos::ArrayRCP;
using Teuchos::as;
typedef scalar_type RangeScalar;
typedef scalar_type DomainScalar;
typedef Teuchos::ScalarTraits<RangeScalar> STRS;
TEUCHOS_TEST_FOR_EXCEPTION(
alpha != Teuchos::ScalarTraits<scalar_type>::one () ||
beta != Teuchos::ScalarTraits<scalar_type>::zero (), std::logic_error,
"Ifpack2::ReorderFilter::apply is only implemented for alpha = 1 and "
"beta = 0. You set alpha = " << alpha << " and beta = " << beta << ".");
TEUCHOS_TEST_FOR_EXCEPTION(
X.getNumVectors() != Y.getNumVectors(), std::runtime_error,
"Ifpack2::OverlappingRowMatrix::apply: The input X and the output Y must "
"have the same number of columns. X.getNumVectors() = "
<< X.getNumVectors() << " != Y.getNumVectors() = " << Y.getNumVectors()
<< ".");
// FIXME (mfh 13 July 2013) This would be a good candidate for a
// local parallel operator implementation. That would obviate the
// need for getting views of the data and make the code below a lot
// simpler.
const RangeScalar zero = STRS::zero ();
ArrayRCP<ArrayRCP<const DomainScalar> > x_ptr = X.get2dView();
ArrayRCP<ArrayRCP<RangeScalar> > y_ptr = Y.get2dViewNonConst();
Y.putScalar(zero);
size_t NumVectors = Y.getNumVectors();
const size_t numMyRowsA = A_->getNodeNumRows ();
for (size_t i = 0; i < numMyRowsA; ++i) {
size_t Nnz;
// Use this class's getrow to make the below code simpler
A_->getLocalRowCopy (i, Indices_ (),Values_ (), Nnz);
if (mode == Teuchos::NO_TRANS) {
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][i] += as<RangeScalar> (Values_[j]) *
as<RangeScalar> (x_ptr[k][Indices_[j]]);
}
else if (mode == Teuchos::TRANS){
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][Indices_[j]] += as<RangeScalar> (Values_[j]) *
as<RangeScalar> (x_ptr[k][i]);
}
else { // mode == Teuchos::CONJ_TRANS
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][Indices_[j]] +=
STRS::conjugate (as<RangeScalar> (Values_[j])) *
as<RangeScalar> (x_ptr[k][i]);
}
}
const size_t numMyRowsB = ExtMatrix_->getNodeNumRows ();
for (size_t i = 0 ; i < numMyRowsB ; ++i) {
size_t Nnz;
// Use this class's getrow to make the below code simpler
ExtMatrix_->getLocalRowCopy (i, Indices_ (), Values_ (), Nnz);
if (mode == Teuchos::NO_TRANS) {
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][numMyRowsA+i] += as<RangeScalar> (Values_[j]) *
as<RangeScalar> (x_ptr[k][Indices_[j]]);
}
else if (mode == Teuchos::TRANS) {
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][numMyRowsA+Indices_[j]] += as<RangeScalar> (Values_[j]) *
as<RangeScalar> (x_ptr[k][i]);
}
else { // mode == Teuchos::CONJ_TRANS
for (size_t j = 0; j < Nnz; ++j)
for (size_t k = 0; k < NumVectors; ++k)
y_ptr[k][numMyRowsA+Indices_[j]] +=
STRS::conjugate (as<RangeScalar> (Values_[j])) *
as<RangeScalar> (x_ptr[k][i]);
}
}
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
importMultiVector (const Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &X,
Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &OvX,
Tpetra::CombineMode CM)
{
OvX.doImport (X, *Importer_, CM);
}
template<class MatrixType>
void
OverlappingRowMatrix<MatrixType>::
exportMultiVector (const Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &OvX,
Tpetra::MultiVector<scalar_type,local_ordinal_type,global_ordinal_type,node_type> &X,
Tpetra::CombineMode CM)
{
X.doExport (OvX, *Importer_, CM);
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::hasTransposeApply () const
{
return true;
}
template<class MatrixType>
bool OverlappingRowMatrix<MatrixType>::supportsRowViews () const
{
return false;
}
template<class MatrixType>
std::string OverlappingRowMatrix<MatrixType>::description() const
{
std::ostringstream oss;
if (isFillComplete()) {
oss << "{ isFillComplete: true"
<< ", global rows: " << getGlobalNumRows()
<< ", global columns: " << getGlobalNumCols()
<< ", global entries: " << getGlobalNumEntries()
<< " }";
}
else {
oss << "{ isFillComplete: false"
<< ", global rows: " << getGlobalNumRows()
<< " }";
}
return oss.str();
}
template<class MatrixType>
void OverlappingRowMatrix<MatrixType>::describe(Teuchos::FancyOStream &out,
const Teuchos::EVerbosityLevel verbLevel) const
{
using std::endl;
using std::setw;
using Teuchos::as;
using Teuchos::VERB_DEFAULT;
using Teuchos::VERB_NONE;
using Teuchos::VERB_LOW;
using Teuchos::VERB_MEDIUM;
using Teuchos::VERB_HIGH;
using Teuchos::VERB_EXTREME;
using Teuchos::RCP;
using Teuchos::null;
using Teuchos::ArrayView;
Teuchos::EVerbosityLevel vl = verbLevel;
if (vl == VERB_DEFAULT) {
vl = VERB_LOW;
}
RCP<const Teuchos::Comm<int> > comm = this->getComm();
const int myRank = comm->getRank();
const int numProcs = comm->getSize();
size_t width = 1;
for (size_t dec=10; dec<getGlobalNumRows(); dec *= 10) {
++width;
}
width = std::max<size_t> (width, as<size_t> (11)) + 2;
Teuchos::OSTab tab(out);
// none: print nothing
// low: print O(1) info from node 0
// medium: print O(P) info, num entries per process
// high: print O(N) info, num entries per row
// extreme: print O(NNZ) info: print indices and values
//
// for medium and higher, print constituent objects at specified verbLevel
if (vl != VERB_NONE) {
if (myRank == 0) {
out << this->description() << std::endl;
}
// O(1) globals, minus what was already printed by description()
//if (isFillComplete() && myRank == 0) {
// out << "Global number of diagonal entries: " << getGlobalNumDiags() << std::endl;
// out << "Global max number of entries in a row: " << getGlobalMaxNumRowEntries() << std::endl;
//}
// constituent objects
if (vl == VERB_MEDIUM || vl == VERB_HIGH || vl == VERB_EXTREME) {
if (myRank == 0) {
out << endl << "Row map:" << endl;
}
getRowMap()->describe(out,vl);
//
if (getColMap() != null) {
if (getColMap() == getRowMap()) {
if (myRank == 0) {
out << endl << "Column map is row map.";
}
}
else {
if (myRank == 0) {
out << endl << "Column map:" << endl;
}
getColMap()->describe(out,vl);
}
}
if (getDomainMap() != null) {
if (getDomainMap() == getRowMap()) {
if (myRank == 0) {
out << endl << "Domain map is row map.";
}
}
else if (getDomainMap() == getColMap()) {
if (myRank == 0) {
out << endl << "Domain map is column map.";
}
}
else {
if (myRank == 0) {
out << endl << "Domain map:" << endl;
}
getDomainMap()->describe(out,vl);
}
}
if (getRangeMap() != null) {
if (getRangeMap() == getDomainMap()) {
if (myRank == 0) {
out << endl << "Range map is domain map." << endl;
}
}
else if (getRangeMap() == getRowMap()) {
if (myRank == 0) {
out << endl << "Range map is row map." << endl;
}
}
else {
if (myRank == 0) {
out << endl << "Range map: " << endl;
}
getRangeMap()->describe(out,vl);
}
}
if (myRank == 0) {
out << endl;
}
}
// O(P) data
if (vl == VERB_MEDIUM || vl == VERB_HIGH || vl == VERB_EXTREME) {
for (int curRank = 0; curRank < numProcs; ++curRank) {
if (myRank == curRank) {
out << "Process rank: " << curRank << std::endl;
out << " Number of entries: " << getNodeNumEntries() << std::endl;
if (isFillComplete()) {
out << " Number of diagonal entries: " << getNodeNumDiags() << std::endl;
}
out << " Max number of entries per row: " << getNodeMaxNumRowEntries() << std::endl;
}
comm->barrier();
comm->barrier();
comm->barrier();
}
}
// O(N) and O(NNZ) data
if (vl == VERB_HIGH || vl == VERB_EXTREME) {
for (int curRank = 0; curRank < numProcs; ++curRank) {
if (myRank == curRank) {
out << std::setw(width) << "Proc Rank"
<< std::setw(width) << "Global Row"
<< std::setw(width) << "Num Entries";
if (vl == VERB_EXTREME) {
out << std::setw(width) << "(Index,Value)";
}
out << endl;
for (size_t r = 0; r < getNodeNumRows (); ++r) {
const size_t nE = getNumEntriesInLocalRow(r);
typename MatrixType::global_ordinal_type gid = getRowMap()->getGlobalElement(r);
out << std::setw(width) << myRank
<< std::setw(width) << gid
<< std::setw(width) << nE;
if (vl == VERB_EXTREME) {
if (isGloballyIndexed()) {
ArrayView<const typename MatrixType::global_ordinal_type> rowinds;
ArrayView<const typename MatrixType::scalar_type> rowvals;
getGlobalRowView (gid, rowinds, rowvals);
for (size_t j = 0; j < nE; ++j) {
out << " (" << rowinds[j]
<< ", " << rowvals[j]
<< ") ";
}
}
else if (isLocallyIndexed()) {
ArrayView<const typename MatrixType::local_ordinal_type> rowinds;
ArrayView<const typename MatrixType::scalar_type> rowvals;
getLocalRowView (r, rowinds, rowvals);
for (size_t j=0; j < nE; ++j) {
out << " (" << getColMap()->getGlobalElement(rowinds[j])
<< ", " << rowvals[j]
<< ") ";
}
} // globally or locally indexed
} // vl == VERB_EXTREME
out << endl;
} // for each row r on this process
} // if (myRank == curRank)
comm->barrier();
comm->barrier();
comm->barrier();
}
out.setOutputToRootOnly(0);
out << "===========\nlocal matrix\n=================" << std::endl;
out.setOutputToRootOnly(-1);
A_->describe(out,Teuchos::VERB_EXTREME);
out.setOutputToRootOnly(0);
out << "===========\nend of local matrix\n=================" << std::endl;
comm->barrier();
out.setOutputToRootOnly(0);
out << "=================\nghost matrix\n=================" << std::endl;
out.setOutputToRootOnly(-1);
ExtMatrix_->describe(out,Teuchos::VERB_EXTREME);
out.setOutputToRootOnly(0);
out << "===========\nend of ghost matrix\n=================" << std::endl;
}
}
}
template<class MatrixType>
Teuchos::RCP<const Tpetra::RowMatrix<typename MatrixType::scalar_type, typename MatrixType::local_ordinal_type, typename MatrixType::global_ordinal_type, typename MatrixType::node_type> >
OverlappingRowMatrix<MatrixType>::getUnderlyingMatrix() const
{
return A_;
}
} // namespace Ifpack2
#define IFPACK2_OVERLAPPINGROWMATRIX_INSTANT(S,LO,GO,N) \
template class Ifpack2::OverlappingRowMatrix< Tpetra::RowMatrix<S, LO, GO, N> >;
#endif // IFPACK2_OVERLAPPINGROWMATRIX_DEF_HPP
|