/usr/include/trilinos/Ifpack_Polynomial.h is in libtrilinos-ifpack-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 | /*@HEADER
// ***********************************************************************
//
// Ifpack: Object-Oriented Algebraic Preconditioner Package
// Copyright (2002) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/
#ifndef IFPACK_POLYNOMIAL_H
#define IFPACK_POLYNOMIAL_H
#include "Ifpack_ConfigDefs.h"
#include "Ifpack_Preconditioner.h"
#include "Teuchos_RefCountPtr.hpp"
#include "Teuchos_LAPACK.hpp"
#include "Teuchos_SerialDenseMatrix.hpp"
namespace Teuchos {
class ParameterList;
}
class Epetra_MultiVector;
class Epetra_Vector;
class Epetra_Map;
class Epetra_Comm;
class Epetra_Time;
class Epetra_Vector;
class Epetra_Operator;
class Epetra_RowMatrix;
#ifdef HAVE_IFPACK_EPETRAEXT
class EpetraExt_PointToBlockDiagPermute;
#endif
//! Ifpack_Polynomial: class for preconditioning with least squares polynomials in Ifpack
/*!
The Ifpack_Polynomial class enables the construction of preconditioners
based on least squares polynomials for an Epetra_RowMatrix. Similar to
Ifpack_Chebyshev, Ifpack_Polynomial is designed for indefinite linear systems.
The list of parameters is
- RealEigRatio_ = List.get("polynomial: real eigenvalue ratio", RealEigRatio_);
- ImagEigRatio_ = List.get("polynomial: imag eigenvalue ratio", ImagEigRatio_);
these are the ratios to estimate the bounds on the spectrum (if the eigenvalue bounds aren't already given)
- LambdaRealMin_ = List.get("polynomial: min real part", LambdaRealMin_);
- LambdaRealMax_ = List.get("polynomial: max real part", LambdaRealMax_);
- LambdaImagMin_ = List.get("polynomial: min imag part", LambdaImagMin_);
- LambdaImagMax_ = List.get("polynomial: max imag part", LambdaImagMax_);
these values define the rectangular region on which the polynomial will be minimized.
- PolyDegree_ = List.get("polynomial: degree",PolyDegree_);
this is the polynomial degree.
- LSPointsReal_ = List.get("polynomial: real interp points",LSPointsReal_);
- LSPointsImag_ = List.get("polynomial: imag interp points",LSPointsImag_);
these are the number of points used in real and imaginary directions which will be used in the least squares problem.
- MinDiagonalValue_ = List.get("polynomial: min diagonal value", MinDiagonalValue_);
this defines the threshold for diagonal values under which they are not inverted
- ZeroStartingSolution_ = List.get("polynomial: zero starting solution", ZeroStartingSolution_);
this flag allows to set a non-zero initial guess.
\author Paul Tsuji, May 2013.
*/
class Ifpack_Polynomial : public Ifpack_Preconditioner {
public:
//@{ \name Constructors/Destructors
//! Ifpack_Polynomial constructor with given Epetra_Operator/Epetra_RowMatrix.
/*! Creates an instance of Ifpack_Polynomial class.
*
* \param
* Matrix - (In) Pointer to the operator to precondition.
*/
Ifpack_Polynomial(const Epetra_Operator* Matrix);
//! Ifpack_Polynomial constructor with given Epetra_Operator/Epetra_RowMatrix.
/*! Creates an instance of Ifpack_Polynomial class.
*
* \param
* Matrix - (In) Pointer to the matrix to precondition.
*/
Ifpack_Polynomial(const Epetra_RowMatrix* Matrix);
//! Destructor.
virtual ~Ifpack_Polynomial() {};
//@}
/*! This flag can be used to apply the preconditioner to the transpose of
* the input operator.
*
* \return Integer error code, set to 0 if successful.
* Set to -1 if this implementation does not support transpose.
*/
virtual inline int SetUseTranspose(bool UseTranspose_in)
{
UseTranspose_ = UseTranspose_in;
return(0);
}
//@}
//@{ \name Mathematical functions.
//! Applies the matrix to an Epetra_MultiVector.
/*!
\param
X - (In) A Epetra_MultiVector of dimension NumVectors to multiply with matrix.
\param
Y - (Out) A Epetra_MultiVector of dimension NumVectors containing the result.
\return Integer error code, set to 0 if successful.
*/
virtual inline int Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;
//! Applies the preconditioner to X, returns the result in Y.
/*!
\param
X - (In) A Epetra_MultiVector of dimension NumVectors to be preconditioned.
\param
Y - (InOut) A Epetra_MultiVector of dimension NumVectors containing result.
\return Integer error code, set to 0 if successful.
\warning This routine is NOT AztecOO complaint.
*/
virtual int ApplyInverse(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;
//! Returns the infinity norm of the global matrix (not implemented)
virtual double NormInf() const
{
return(-1.0);
}
//@}
//@{ \name Attribute access functions
virtual const char * Label() const
{
return(Label_.c_str());
}
//! Returns the current UseTranspose setting.
virtual bool UseTranspose() const
{
return(UseTranspose_);
}
//! Returns true if the \e this object can provide an approximate Inf-norm, false otherwise.
virtual bool HasNormInf() const
{
return(false);
}
//! Returns a pointer to the Epetra_Comm communicator associated with this operator.
virtual const Epetra_Comm & Comm() const;
//! Returns the Epetra_Map object associated with the domain of this operator.
virtual const Epetra_Map & OperatorDomainMap() const;
//! Returns the Epetra_Map object associated with the range of this operator.
virtual const Epetra_Map & OperatorRangeMap() const;
virtual int Initialize();
virtual bool IsInitialized() const
{
return(IsInitialized_);
}
//! Returns \c true if the preconditioner has been successfully computed.
virtual inline bool IsComputed() const
{
return(IsComputed_);
}
//! Computes the preconditioners.
virtual int Compute();
//@{ \name Miscellaneous
virtual const Epetra_RowMatrix& Matrix() const
{
return(*Matrix_);
}
//! Computes the condition number estimates and returns the value.
virtual double Condest(const Ifpack_CondestType CT = Ifpack_Cheap,
const int MaxIters = 1550,
const double Tol = 1e-9,
Epetra_RowMatrix* Matrix_in = 0);
//! Returns the condition number estimate, or -1.0 if not computed.
virtual double Condest() const
{
return(Condest_);
}
//! Sets all the parameters for the preconditioner
virtual int SetParameters(Teuchos::ParameterList& List);
//! Prints object to an output stream
virtual std::ostream& Print(std::ostream & os) const;
//@}
//@{ \name Timing and flop count
//! Returns the number of calls to Initialize().
virtual int NumInitialize() const
{
return(NumInitialize_);
}
//! Returns the number of calls to Compute().
virtual int NumCompute() const
{
return(NumCompute_);
}
//! Returns the number of calls to ApplyInverse().
virtual int NumApplyInverse() const
{
return(NumApplyInverse_);
}
//! Returns the time spent in Initialize().
virtual double InitializeTime() const
{
return(InitializeTime_);
}
//! Returns the time spent in Compute().
virtual double ComputeTime() const
{
return(ComputeTime_);
}
//! Returns the time spent in ApplyInverse().
virtual double ApplyInverseTime() const
{
return(ApplyInverseTime_);
}
//! Returns the number of flops in the initialization phase.
virtual double InitializeFlops() const
{
return(0.0);
}
//! Returns the number of flops in the computation phase.
virtual double ComputeFlops() const
{
return(ComputeFlops_);
}
//! Returns the number of flops for the application of the preconditioner.
virtual double ApplyInverseFlops() const
{
return(ApplyInverseFlops_);
}
// @}
// @{ \name Utility methods
//! Simple power method to compute lambda_max.
static int PowerMethod(const Epetra_Operator& Operator,
const Epetra_Vector& InvPointDiagonal,
const int MaximumIterations,
double& LambdaMax);
//! Uses AztecOO's CG to estimate lambda_min and lambda_max.
static int CG(const Epetra_Operator& Operator,
const Epetra_Vector& InvPointDiagonal,
const int MaximumIterations,
double& lambda_min, double& lambda_max);
#ifdef HAVE_IFPACK_EPETRAEXT
//! Uses AztecOO's CG to estimate lambda_min and lambda_max.
// WARNING: This only works in Block Mode.
int CG(const int MaximumIterations,
double& lambda_min, double& lambda_max);
//! Simple power method to compute lambda_max.
// WARNING: This only works in Block Mode.
int PowerMethod(const int MaximumIterations,double& lambda_max);
#endif
//! Uses AztecOO's GMRES to estimate the height and width of the spectrum.
int GMRES(const Epetra_Operator& Operator,
const Epetra_Vector& InvPointDiagonal,
const int MaximumIterations,
double& lambda_real_min, double& lambda_real_max,
double& lambda_imag_min, double& lambda_imag_max);
private:
// @}
// @{ \name Private methods
//! Sets the label.
virtual void SetLabel();
//! Copy constructor (PRIVATE, should not be used)
Ifpack_Polynomial(const Ifpack_Polynomial& rhs)
{}
//! operator = (PRIVATE, should not be used)
Ifpack_Polynomial& operator=(const Ifpack_Polynomial& rhs)
{
return(*this);
}
// @{ Initializations, timing and flops
//! If \c true, the preconditioner has been computed successfully.
bool IsInitialized_;
//! If \c true, the preconditioner has been computed successfully.
bool IsComputed_;
//! If \c true, have to compute polynomial for a spectrum with negative eigenvalues.
bool IsIndefinite_;
//! If \c true, have to compute polynomial for a spectrum with nonzero imaginary part.
bool IsComplex_;
//! Contains the number of successful calls to Initialize().
int NumInitialize_;
//! Contains the number of successful call to Compute().
int NumCompute_;
//! Contains the number of successful call to ApplyInverse().
mutable int NumApplyInverse_;
//! Contains the time for all successful calls to Initialize().
double InitializeTime_;
//! Contains the time for all successful calls to Compute().
double ComputeTime_;
//! Contains the time for all successful calls to ApplyInverse().
mutable double ApplyInverseTime_;
//! Contains the number of flops for Compute().
double ComputeFlops_;
//! Contain sthe number of flops for ApplyInverse().
mutable double ApplyInverseFlops_;
// @}
// @{ Settings
//! Contains the degree of the least squares polynomial.
int PolyDegree_;
//! Contains the number of discretization points of the least squares problem.
int LSPointsReal_, LSPointsImag_;
//! If true, use the tranpose of \c Matrix_.
bool UseTranspose_;
//! Contains the estimated condition number
double Condest_;
#if 0
// Unused; commented out to avoid build warnings
//! If true, Compute() also computes the condition number estimate.
bool ComputeCondest_;
#endif // 0
//! Contains the ratio such that the rectangular domain in the complex plane
//! is [-LambdaRealMax_ / EigRatio_, LambdaRealMax_] x [-LambdaRealMax_ / ImagEigRatio_, LambdaRealMax_ / ImagEigRatio_]
double RealEigRatio_, ImagEigRatio_;
//! Max number of iterations to use in eigenvalue estimation (if automatic).
int EigMaxIters_;
//! Contains the label of this object.
std::string Label_;
//! Bounds on the spectrum
double LambdaRealMin_, LambdaRealMax_, LambdaImagMin_, LambdaImagMax_;
//! Contains the minimum value on the diagonal.
double MinDiagonalValue_;
//! coefficients of the polynomial
std::vector<double> coeff_;
// @{ Other data
//! Number of local rows.
int NumMyRows_;
//! Number of local nonzeros.
int NumMyNonzeros_;
//! Number of global rows.
long long NumGlobalRows_;
//! Number of global nonzeros.
long long NumGlobalNonzeros_;
//! Pointers to the matrix to be preconditioned as an Epetra_Operator.
Teuchos::RefCountPtr<const Epetra_Operator> Operator_;
//! Pointers to the matrix to be preconditioned as an Epetra_RowMatrix.
Teuchos::RefCountPtr<const Epetra_RowMatrix> Matrix_;
//! Contains the inverse of diagonal elements of \c Matrix.
mutable Teuchos::RefCountPtr<Epetra_Vector> InvDiagonal_;
//! Use Block Preconditioning
bool UseBlockMode_;
#ifdef HAVE_IFPACK_EPETRAEXT
//! Max/Min Ration for autocomputing eigenvalues
Teuchos::ParameterList BlockList_;
Teuchos::RefCountPtr<EpetraExt_PointToBlockDiagPermute> InvBlockDiagonal_;
#endif
//! Run on the normal equations
bool SolveNormalEquations_;
//! If \c true, the Operator_ is an Epetra_RowMatrix.
bool IsRowMatrix_;
//! Time object to track timing.
Teuchos::RefCountPtr<Epetra_Time> Time_;
//! If \c true, the starting solution is always the zero vector.
bool ZeroStartingSolution_;
// @}
};
#endif // IFPACK_POLYNOMIAL_H
|