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// ************************************************************************
//
// Belos: Block Linear Solvers Package
// Copyright 2004 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
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// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
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// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
//
// This file contains an implementation of the TFQMR iteration
// for solving non-Hermitian linear systems of equations Ax = b,
// where b is a single-vector and x is the corresponding solution.
//
// The implementation is a slight modification on the TFQMR iteration
// found in Saad's "Iterative Methods for Sparse Linear Systems".
//
#ifndef BELOS_PSEUDO_BLOCK_TFQMR_ITER_HPP
#define BELOS_PSEUDO_BLOCK_TFQMR_ITER_HPP
/*!
\file BelosPseudoBlockTFQMRIter.hpp
\brief Belos concrete class for generating iterations with the
preconditioned tranpose-free QMR (TFQMR) method.
*/
#include "BelosConfigDefs.hpp"
#include "BelosIteration.hpp"
#include "BelosTypes.hpp"
#include "BelosLinearProblem.hpp"
#include "BelosMatOrthoManager.hpp"
#include "BelosOutputManager.hpp"
#include "BelosStatusTest.hpp"
#include "BelosOperatorTraits.hpp"
#include "BelosMultiVecTraits.hpp"
#include "Teuchos_BLAS.hpp"
#include "Teuchos_ScalarTraits.hpp"
#include "Teuchos_ParameterList.hpp"
#include "Teuchos_TimeMonitor.hpp"
/*! \class Belos::PseudoBlockTFQMRIter
\brief This class implements the preconditioned transpose-free QMR algorithm for
solving non-Hermitian linear systems of equations Ax = b, where b is the right-hand
side vector and x is the corresponding solution.
\ingroup belos_solver_framework
\author Heidi Thornquist
*/
namespace Belos {
/** \brief Structure to contain pointers to PseudoBlockTFQMRIter state variables.
*
* This struct is utilized by PseudoBlockTFQMRIter::initialize() and PseudoBlockTFQMRIter::getState().
*/
template <class ScalarType, class MV>
struct PseudoBlockTFQMRIterState {
typedef Teuchos::ScalarTraits<ScalarType> SCT;
typedef typename SCT::magnitudeType MagnitudeType;
/*! \brief The current residual basis. */
Teuchos::RCP<const MV> W;
Teuchos::RCP<const MV> U;
Teuchos::RCP<const MV> AU;
Teuchos::RCP<const MV> Rtilde;
Teuchos::RCP<const MV> D;
Teuchos::RCP<const MV> V;
std::vector<ScalarType> alpha, eta, rho;
std::vector<MagnitudeType> tau, theta;
PseudoBlockTFQMRIterState() : W(Teuchos::null), U(Teuchos::null), AU(Teuchos::null),
Rtilde(Teuchos::null), D(Teuchos::null), V(Teuchos::null)
{}
};
//! @name PseudoBlockTFQMRIter Exceptions
//@{
/** \brief PseudoBlockTFQMRIterInitFailure is thrown when the PseudoBlockTFQMRIter object is unable to
* generate an initial iterate in the PseudoBlockTFQMRIter::initialize() routine.
*
* This std::exception is thrown from the PseudoBlockTFQMRIter::initialize() method, which is
* called by the user or from the PseudoBlockTFQMRIter::iterate() method if isInitialized()
* == \c false.
*
* In the case that this std::exception is thrown,
* PseudoBlockTFQMRIter::isInitialized() will be \c false and the user will need to provide
* a new initial iterate to the iteration.
*/
class PseudoBlockTFQMRIterInitFailure : public BelosError {public:
PseudoBlockTFQMRIterInitFailure(const std::string& what_arg) : BelosError(what_arg)
{}};
/** \brief PseudoBlockTFQMRIterateFailure is thrown when the PseudoBlockTFQMRIter object is unable to
* compute the next iterate in the PseudoBlockTFQMRIter::iterate() routine.
*
* This std::exception is thrown from the PseudoBlockTFQMRIter::iterate() method.
*
*/
class PseudoBlockTFQMRIterateFailure : public BelosError {public:
PseudoBlockTFQMRIterateFailure(const std::string& what_arg) : BelosError(what_arg)
{}};
//@}
template <class ScalarType, class MV, class OP>
class PseudoBlockTFQMRIter : public Iteration<ScalarType,MV,OP> {
public:
//
// Convenience typedefs
//
typedef MultiVecTraits<ScalarType,MV> MVT;
typedef OperatorTraits<ScalarType,MV,OP> OPT;
typedef Teuchos::ScalarTraits<ScalarType> SCT;
typedef typename SCT::magnitudeType MagnitudeType;
//! @name Constructor/Destructor.
//@{
//! %Belos::PseudoBlockTFQMRIter constructor.
PseudoBlockTFQMRIter( const Teuchos::RCP<LinearProblem<ScalarType,MV,OP> > &problem,
const Teuchos::RCP<OutputManager<ScalarType> > &printer,
const Teuchos::RCP<StatusTest<ScalarType,MV,OP> > &tester,
Teuchos::ParameterList ¶ms );
//! %Belos::PseudoBlockTFQMRIter destructor.
virtual ~PseudoBlockTFQMRIter() {};
//@}
//! @name Solver methods
//@{
/*! \brief This method performs block TFQMR iterations until the status
* test indicates the need to stop or an error occurs (in which case, an
* std::exception is thrown).
*
* iterate() will first determine whether the solver is inintialized; if
* not, it will call initialize() using default arguments. After
* initialization, the solver performs block TFQMR iterations until the
* status test evaluates as ::Passed, at which point the method returns to
* the caller.
*
* The block TFQMR iteration proceeds as follows:
* -# The operator problem->applyOp() is applied to the newest \c blockSize vectors in the Krylov basis.
* -# The resulting vectors are orthogonalized against the previous basis vectors, and made orthonormal.
* -# The Hessenberg matrix is updated.
* -# The least squares system is updated.
*
* The status test is queried at the beginning of the iteration.
*
* Possible exceptions thrown include the PseudoBlockTFQMRIterOrthoFailure.
*
*/
void iterate();
/*! \brief Initialize the solver to an iterate, providing a complete state.
*
* The %BlockPseudoBlockTFQMRIter contains a certain amount of state, consisting of the current
* Krylov basis and the associated Hessenberg matrix.
*
* initialize() gives the user the opportunity to manually set these,
* although this must be done with caution, abiding by the rules given
* below. All notions of orthogonality and orthonormality are derived from
* the inner product specified by the orthogonalization manager.
*
* \post
* <li>isInitialized() == \c true (see post-conditions of isInitialize())
*
* The user has the option of specifying any component of the state using
* initialize(). However, these arguments are assumed to match the
* post-conditions specified under isInitialized(). Any necessary component of the
* state not given to initialize() will be generated.
*
* \note For any pointer in \c newstate which directly points to the multivectors in
* the solver, the data is not copied.
*/
void initializeTFQMR(const PseudoBlockTFQMRIterState<ScalarType,MV> & newstate);
/*! \brief Initialize the solver with the initial vectors from the linear problem
* or random data.
*/
void initialize()
{
PseudoBlockTFQMRIterState<ScalarType,MV> empty;
initializeTFQMR(empty);
}
/*! \brief Get the current state of the linear solver.
*
* The data is only valid if isInitialized() == \c true.
*
* \returns A PseudoBlockTFQMRIterState object containing const pointers to the current
* solver state.
*/
PseudoBlockTFQMRIterState<ScalarType,MV> getState() const {
PseudoBlockTFQMRIterState<ScalarType,MV> state;
// Copy over the vectors.
state.W = W_;
state.U = U_;
state.AU = AU_;
state.Rtilde = Rtilde_;
state.D = D_;
state.V = V_;
// Copy over the scalars.
state.alpha = alpha_;
state.eta = eta_;
state.rho = rho_;
state.tau = tau_;
state.theta = theta_;
return state;
}
//@}
//! @name Status methods
//@{
//! \brief Get the current iteration count.
int getNumIters() const { return iter_; }
//! \brief Reset the iteration count.
void resetNumIters( int iter = 0 ) { iter_ = iter; }
//! Get the norms of the residuals native to the solver.
//! \return A std::vector of length blockSize containing the native residuals.
Teuchos::RCP<const MV> getNativeResiduals( std::vector<MagnitudeType> *norms ) const;
//! Get the current update to the linear system.
/*! \note This method returns the accumulated update to the solution instead of updating
the linear problem, since it may incur an additional preconditioner application each iteration.
*/
Teuchos::RCP<MV> getCurrentUpdate() const { return solnUpdate_; }
//@}
//! @name Accessor methods
//@{
//! Get a constant reference to the linear problem.
const LinearProblem<ScalarType,MV,OP>& getProblem() const { return *lp_; }
//! Get the blocksize to be used by the iterative solver in solving this linear problem.
int getBlockSize() const { return 1; }
//! \brief Set the blocksize.
void setBlockSize(int blockSize) {
TEUCHOS_TEST_FOR_EXCEPTION(blockSize!=1,std::invalid_argument,
"Belos::PseudoBlockTFQMRIter::setBlockSize(): Cannot use a block size that is not one.");
}
//! States whether the solver has been initialized or not.
bool isInitialized() { return initialized_; }
//@}
private:
//
// Classes inputed through constructor that define the linear problem to be solved.
//
const Teuchos::RCP<LinearProblem<ScalarType,MV,OP> > lp_;
const Teuchos::RCP<OutputManager<ScalarType> > om_;
const Teuchos::RCP<StatusTest<ScalarType,MV,OP> > stest_;
//
// Algorithmic parameters
//
// numRHS_ is the current number of linear systems being solved.
int numRHS_;
// Storage for QR factorization of the least squares system.
std::vector<ScalarType> alpha_, eta_, rho_, rho_old_;
std::vector<MagnitudeType> tau_, theta_;
//
// Current solver state
//
// initialized_ specifies that the basis vectors have been initialized and the iterate() routine
// is capable of running; _initialize is controlled by the initialize() member method
// For the implications of the state of initialized_, please see documentation for initialize()
bool initialized_;
// Current subspace dimension, and number of iterations performed.
int iter_;
//
// State Storage
//
Teuchos::RCP<MV> W_;
Teuchos::RCP<MV> U_, AU_;
Teuchos::RCP<MV> Rtilde_;
Teuchos::RCP<MV> D_;
Teuchos::RCP<MV> V_;
Teuchos::RCP<MV> solnUpdate_;
};
//
// Implementation
//
//////////////////////////////////////////////////////////////////////////////////////////////////
// Constructor.
template <class ScalarType, class MV, class OP>
PseudoBlockTFQMRIter<ScalarType,MV,OP>::PseudoBlockTFQMRIter(const Teuchos::RCP<LinearProblem<ScalarType,MV,OP> > &problem,
const Teuchos::RCP<OutputManager<ScalarType> > &printer,
const Teuchos::RCP<StatusTest<ScalarType,MV,OP> > &tester,
Teuchos::ParameterList ¶ms
) :
lp_(problem),
om_(printer),
stest_(tester),
numRHS_(0),
initialized_(false),
iter_(0)
{
}
//////////////////////////////////////////////////////////////////////////////////////////////////
// Compute native residual from TFQMR recurrence.
template <class ScalarType, class MV, class OP>
Teuchos::RCP<const MV>
PseudoBlockTFQMRIter<ScalarType,MV,OP>::getNativeResiduals( std::vector<MagnitudeType> *normvec ) const
{
MagnitudeType one = Teuchos::ScalarTraits<MagnitudeType>::one();
if (normvec) {
// Resize the vector passed in, if it is too small.
if ((int) normvec->size() < numRHS_)
normvec->resize( numRHS_ );
// Compute the native residuals.
for (int i=0; i<numRHS_; i++) {
(*normvec)[i] = Teuchos::ScalarTraits<MagnitudeType>::squareroot( 2*iter_ + one )*tau_[i];
}
}
return Teuchos::null;
}
//////////////////////////////////////////////////////////////////////////////////////////////////
// Initialize this iteration object
template <class ScalarType, class MV, class OP>
void PseudoBlockTFQMRIter<ScalarType,MV,OP>::initializeTFQMR(const PseudoBlockTFQMRIterState<ScalarType,MV> & newstate)
{
// Create convenience variables for zero and one.
const ScalarType STone = Teuchos::ScalarTraits<ScalarType>::one();
const ScalarType STzero = Teuchos::ScalarTraits<ScalarType>::zero();
const MagnitudeType MTzero = Teuchos::ScalarTraits<MagnitudeType>::zero();
// NOTE: In PseudoBlockTFQMRIter Rtilde_, the initial residual, is required!!!
TEUCHOS_TEST_FOR_EXCEPTION(newstate.Rtilde == Teuchos::null,std::invalid_argument,
"Belos::PseudoBlockTFQMRIter::initialize(): PseudoBlockTFQMRIterState does not have initial residual.");
// Get the number of right-hand sides we're solving for now.
int numRHS = MVT::GetNumberVecs(*newstate.Rtilde);
numRHS_ = numRHS;
// Initialize the state storage
// If the subspace has not be initialized before or we are reusing this solver object, generate it using Rtilde.
if ( Teuchos::is_null(Rtilde_) || (MVT::GetNumberVecs(*Rtilde_) == numRHS_) )
{
// Create and/or initialize D_.
if ( Teuchos::is_null(D_) )
D_ = MVT::Clone( *newstate.Rtilde, numRHS_ );
MVT::MvInit( *D_, STzero );
// Create and/or initialize solnUpdate_;
if ( Teuchos::is_null(solnUpdate_) )
solnUpdate_ = MVT::Clone( *newstate.Rtilde, numRHS_ );
MVT::MvInit( *solnUpdate_, STzero );
// Create Rtilde_.
if (newstate.Rtilde != Rtilde_)
Rtilde_ = MVT::CloneCopy( *newstate.Rtilde );
W_ = MVT::CloneCopy( *Rtilde_ );
U_ = MVT::CloneCopy( *Rtilde_ );
V_ = MVT::Clone( *Rtilde_, numRHS_ );
// Multiply the current residual by Op and store in V_
// V_ = Op * R_
lp_->apply( *U_, *V_ );
AU_ = MVT::CloneCopy( *V_ );
// Resize work vectors.
alpha_.resize( numRHS_, STone );
eta_.resize( numRHS_, STzero );
rho_.resize( numRHS_ );
rho_old_.resize( numRHS_ );
tau_.resize( numRHS_ );
theta_.resize( numRHS_, MTzero );
MVT::MvNorm( *Rtilde_, tau_ ); // tau = ||r_0||
MVT::MvDot( *Rtilde_, *Rtilde_, rho_ ); // rho = (r_tilde, r0)
}
else
{
// If the subspace has changed sizes, clone it from the incoming state.
Rtilde_ = MVT::CloneCopy( *newstate.Rtilde );
W_ = MVT::CloneCopy( *newstate.W );
U_ = MVT::CloneCopy( *newstate.U );
AU_ = MVT::CloneCopy( *newstate.AU );
D_ = MVT::CloneCopy( *newstate.D );
V_ = MVT::CloneCopy( *newstate.V );
// The solution update is just set to zero, since the current update has already
// been added to the solution during deflation.
solnUpdate_ = MVT::Clone( *Rtilde_, numRHS_ );
MVT::MvInit( *solnUpdate_, STzero );
// Copy work vectors.
alpha_ = newstate.alpha;
eta_ = newstate.eta;
rho_ = newstate.rho;
tau_ = newstate.tau;
theta_ = newstate.theta;
}
// The solver is initialized
initialized_ = true;
}
//////////////////////////////////////////////////////////////////////////////////////////////////
// Iterate until the status test informs us we should stop.
template <class ScalarType, class MV, class OP>
void PseudoBlockTFQMRIter<ScalarType,MV,OP>::iterate()
{
//
// Allocate/initialize data structures
//
if (initialized_ == false) {
initialize();
}
// Create convenience variables for zero and one.
const ScalarType STone = Teuchos::ScalarTraits<ScalarType>::one();
const ScalarType STzero = Teuchos::ScalarTraits<ScalarType>::zero();
const MagnitudeType MTone = Teuchos::ScalarTraits<MagnitudeType>::one();
std::vector< ScalarType > beta(numRHS_,STzero);
std::vector<int> index(1);
//
// Start executable statements.
//
////////////////////////////////////////////////////////////////
// Iterate until the status test tells us to stop.
//
while (stest_->checkStatus(this) != Passed) {
for (int iIter=0; iIter<2; iIter++)
{
//
//--------------------------------------------------------
// Compute the new alpha if we need to
//--------------------------------------------------------
//
if (iIter == 0) {
MVT::MvDot( *V_, *Rtilde_, alpha_ ); // alpha = rho / (r_tilde, v)
for (int i=0; i<numRHS_; i++) {
rho_old_[i] = rho_[i]; // rho_old = rho
alpha_[i] = rho_old_[i]/alpha_[i];
}
}
//
//--------------------------------------------------------
// Loop over all RHS and compute updates.
//--------------------------------------------------------
//
for (int i=0; i<numRHS_; ++i) {
index[0] = i;
//
//--------------------------------------------------------
// Update w.
// w = w - alpha*Au
//--------------------------------------------------------
//
Teuchos::RCP<const MV> AU_i = MVT::CloneView( *AU_, index );
Teuchos::RCP<MV> W_i = MVT::CloneViewNonConst( *W_, index );
MVT::MvAddMv( STone, *W_i, -alpha_[i], *AU_i, *W_i );
//
//--------------------------------------------------------
// Update d.
// d = u + (theta^2/alpha)eta*d
//--------------------------------------------------------
//
Teuchos::RCP<const MV> U_i = MVT::CloneView( *U_, index );
Teuchos::RCP<MV> D_i = MVT::CloneViewNonConst( *D_, index );
MVT::MvAddMv( STone, *U_i, (theta_[i]*theta_[i]/alpha_[i])*eta_[i], *D_i, *D_i );
//
//--------------------------------------------------------
// Update u if we need to.
// u = u - alpha*v
//
// Note: This is usually computed with alpha (above), but we're trying be memory efficient.
//--------------------------------------------------------
//
if (iIter == 0) {
// Compute new U.
Teuchos::RCP<const MV> V_i = MVT::CloneView( *V_, index );
Teuchos::RCP<MV> U2_i = MVT::CloneViewNonConst( *U_, index );
MVT::MvAddMv( STone, *U2_i, -alpha_[i], *V_i, *U2_i );
}
}
//
//--------------------------------------------------------
// Update Au for the next iteration.
//--------------------------------------------------------
//
if (iIter == 0) {
lp_->apply( *U_, *AU_ );
}
//
//--------------------------------------------------------
// Compute the new theta, c, eta, tau; i.e. the update to the least squares solution.
//--------------------------------------------------------
//
MVT::MvNorm( *W_, theta_ ); // theta = ||w|| / tau
for (int i=0; i<numRHS_; ++i) {
theta_[i] /= tau_[i];
// cs = 1.0 / sqrt(1.0 + theta^2)
MagnitudeType cs = MTone / Teuchos::ScalarTraits<MagnitudeType>::squareroot(MTone + theta_[i]*theta_[i]);
tau_[i] *= theta_[i]*cs; // tau = tau * theta * cs
eta_[i] = cs*cs*alpha_[i]; // eta = cs^2 * alpha
}
//
//--------------------------------------------------------
// Accumulate the update for the solution x := x + eta*D_
//--------------------------------------------------------
//
for (int i=0; i<numRHS_; ++i) {
index[0]=i;
Teuchos::RCP<const MV> D_i = MVT::CloneView( *D_, index );
Teuchos::RCP<MV> update_i = MVT::CloneViewNonConst( *solnUpdate_, index );
MVT::MvAddMv( STone, *update_i, eta_[i], *D_i, *update_i );
}
//
if (iIter == 1) {
//
//--------------------------------------------------------
// Compute the new rho, beta if we need to.
//--------------------------------------------------------
//
MVT::MvDot( *W_, *Rtilde_, rho_ ); // rho = (r_tilde, w)
for (int i=0; i<numRHS_; ++i) {
beta[i] = rho_[i]/rho_old_[i]; // beta = rho / rho_old
//
//--------------------------------------------------------
// Update u, v, and Au if we need to.
// Note: We are updating v in two stages to be memory efficient
//--------------------------------------------------------
//
index[0]=i;
Teuchos::RCP<const MV> W_i = MVT::CloneView( *W_, index );
Teuchos::RCP<MV> U_i = MVT::CloneViewNonConst( *U_, index );
MVT::MvAddMv( STone, *W_i, beta[i], *U_i, *U_i ); // u = w + beta*u
// First stage of v update.
Teuchos::RCP<const MV> AU_i = MVT::CloneView( *AU_, index );
Teuchos::RCP<MV> V_i = MVT::CloneViewNonConst( *V_, index );
MVT::MvAddMv( STone, *AU_i, beta[i], *V_i, *V_i ); // v = Au + beta*v
}
// Update Au.
lp_->apply( *U_, *AU_ ); // Au = A*u
// Second stage of v update.
for (int i=0; i<numRHS_; ++i) {
index[0]=i;
Teuchos::RCP<const MV> AU_i = MVT::CloneView( *AU_, index );
Teuchos::RCP<MV> V_i = MVT::CloneViewNonConst( *V_, index );
MVT::MvAddMv( STone, *AU_i, beta[i], *V_i, *V_i ); // v = Au + beta*v
}
}
}
// Increment the iteration
iter_++;
} // end while (sTest_->checkStatus(this) != Passed)
}
} // namespace Belos
//
#endif // BELOS_PSEUDO_BLOCK_TFQMR_ITER_HPP
//
// End of file BelosPseudoBlockTFQMRIter.hpp
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