/usr/include/io_lib/open_trace_file.h is in libstaden-read-dev 1.14.8-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 | /*
* Copyright (c) 2005-2007, 2013 Genome Research Ltd.
* Author(s): James Bonfield
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2. Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
*
* 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
* Institute nor the names of its contributors may be used to endorse
* or promote products derived from this software without specific
* prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
* IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
* TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
* PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
* LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
/*
* Author(s): James Bonfield
*
* Copyright (c) 2001 MEDICAL RESEARCH COUNCIL
* All rights reserved
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1 Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2 Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in
* the documentation and/or other materials provided with the
* distribution.
*
* 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF
* MOLECULAR BIOLOGY nor the names of its contributors may be used
* to endorse or promote products derived from this software without
* specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*/
#ifndef _OPEN_TRACE_FILE_H_
#define _OPEN_TRACE_FILE_H_
#include "io_lib/mFILE.h"
#ifdef __cplusplus
extern "C" {
#endif
/*
* Tokenises the search path splitting on colons (unix) or semicolons
* (windows).
* We also explicitly add a "./" to the end of the search path
*
* Returns: A new search path with items separated by nul chars. Two nul
* chars in a row represent the end of the tokenised path.
* Returns NULL for a failure.
*
* The returned data has been malloced. It is up to the caller to free this
* memory.
*/
char *tokenise_search_path(char *searchpath);
/*
* Opens a trace file named 'file'. This is initially looked for as a
* pathname relative to a file named "relative_to". This may (for
* example) be the name of an experiment file referencing the trace
* file. In this case by passing relative_to as the experiment file
* filename the trace file will be picked up in the same directory as
* the experiment file. Relative_to may be supplied as NULL.
*
* 'file' is looked for at relative_to, then the current directory, and then
* all of the locations listed in 'path' (which is a colon separated list).
* If 'path' is NULL it uses the RAWDATA environment variable instead.
*
* Returns a mFILE pointer when found.
* NULL otherwise.
*/
mFILE *open_path_mfile(char *file, char *path, char *relative_to);
/*
* Returns a mFILE containing the entire contents of the url;
* NULL on failure.
*/
mFILE *find_file_url(char *file, char *url);
/*
* Opens a trace file named 'file'. This is initially looked for as a
* pathname relative to a file named "relative_to". This may (for
* example) be the name of an experiment file referencing the trace
* file. In this case by passing relative_to as the experiment file
* filename the trace file will be picked up in the same directory as
* the experiment file. Relative_to may be supplied as NULL.
*
* 'file' is looked for at relative_to, then the current directory, and then
* all of the locations listed in RAWDATA (which is a colon separated list).
*
* Returns a mFILE pointer when found.
* NULL otherwise.
*/
mFILE *open_trace_mfile(char *file, char *relative_to);
FILE *open_trace_file(char *file, char *relative_to);
mFILE *open_exp_mfile(char *file, char *relative_to);
FILE *open_exp_file(char *file, char *relative_to);
void iolib_set_trace_path(char *path);
char *iolib_get_trace_path(void);
void iolib_set_exp_path (char *path);
char *iolib_get_exp_path (void);
#ifdef __cplusplus
}
#endif
#endif /* _OPEN_TRACE_FILE_H_ */
|