/usr/include/snp-sites/snp-sites.h is in libsnp-sites1-dev 2.3.2-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 | /*
* Wellcome Trust Sanger Institute
* Copyright (C) 2013-2016 Wellcome Trust Sanger Institute
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 3
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
*/
#ifndef _SNP_SITES_H_
#define _SNP_SITES_H_
#include <stdio.h>
int generate_snp_sites(char filename[],
int output_multi_fasta_file,
int output_vcf_file,
int output_phylip_file,
char output_filename[]);
int generate_snp_sites_with_ref(char filename[],
int output_multi_fasta_file,
int output_vcf_file,
int output_phylip_file,
char output_filename[]);
int generate_snp_sites_with_ref_pure_mono(char filename[],
int output_multi_fasta_file,
int output_vcf_file,
int output_phylip_file,
char output_filename[],
int output_reference,
int pure_mode,
int output_monomorphic);
void strip_directory_from_filename(char *input_filename,
char *output_filename);
#endif
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