/usr/include/sbml/xml/XMLOutputStream.h is in libsbml5-dev 5.13.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374 1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 | /**
* @file XMLOutputStream.h
* @brief XMLOutputStream
* @author Ben Bornstein
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2016 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution and
* also available online as http://sbml.org/software/libsbml/license.html
* ---------------------------------------------------------------------- -->
*
* @class XMLOutputStream
* @sbmlbrief{core} Interface to an XML output stream.
*
* @htmlinclude not-sbml-warning.html
*
* SBML content is serialized using XML; the resulting data can be stored and
* read to/from a file or data stream. Low-level XML parsers such as Xerces
* provide facilities to read XML data. To permit the use of different XML
* parsers (Xerces, Expat or libxml2), libSBML implements an abstraction
* layer. XMLInputStream and XMLOutputStream are two parts of that
* abstraction layer.
*
* XMLOutputStream provides a wrapper above output streams to facilitate
* writing XML. XMLOutputStream keeps track of start and end elements,
* indentation, XML namespace prefixes, and more. The interface provides
* features for converting non-text data types into appropriate textual form;
* this takes the form of overloaded <code>writeAttribute(...)</code> methods
* that allow users to simply use the same method with any data type. For
* example, suppose an element @c testElement has two attributes, @c size and
* @c id, and the attributes are variables in your code as follows:
@if cpp
@code{.cpp}
double size = 3.2;
std::string id = "id";
@endcode
@endif
@if java
@code
double size = 3.2;
String id = "id";
@endcode
@endif
@if python
@code
size = 3.2;
id = "id";
@endcode
@endif
* Then, the element and the attributes can be written to the
* standard output stream @ifnot cpp (provided as @c cout in the libSBML
* language bindings)@endif@~ as follows:
@if cpp
@code{.cpp}
double size = 3.2;
std::string id = "id";
// Create an XMLOutputStream object that will write to the
// standard output stream:
XMLOutputStream xos = new XMLOutputStream(cout);
// Create the start element, write the attributes, and close
// the element. The output will be written immediately as
// each method is called.
xos.startElement("testElement")
xos.writeAttribute("size", size)
xos.writeAttribute("id", id)
xos.endElement("testElement")
@endcode
@endif
@if java
@code{.java}
import org.sbml.libsbml.XMLOutputStream;
import org.sbml.libsbml.libsbml;
public class test
{
public static void main (String[] args)
{
double size = 3.2;
String id = "id";
// Create an XMLOutputStream object that will write to the
// standard output stream, which is provide in libSBML's
// Java language interface as the object "libsbml.cout".
XMLOutputStream xos = new XMLOutputStream(libsbml.cout);
// Create the start element, write the attributes, and close
// the element. The output will be written immediately as
// each method is called.
xos.startElement("testElement");
xos.writeAttribute("size", size);
xos.writeAttribute("id", id);
xos.endElement("testElement");
}
static
{
System.loadLibrary("sbmlj");
}
}
@endcode
@endif
@if python
@code{.py}
from libsbml import *
size = 3.2;
id = "id";
# Create an XMLOutputStream object that will write to the standard
# output stream, which is provide in libSBML's Python language
# interface as the object "libsbml.cout". Since we imported * from
# the libsbml module, we can simply refer to it as "cout" here:
output_stream = XMLOutputStream(cout)
# Create the start element, write the attributes, and close the
# element. The output is written immediately by each method.
output_stream.startElement("testElement")
output_stream.writeAttribute("size", size)
output_stream.writeAttribute("id", id)
output_stream.endElement("testElement")
@endcode
@endif
*
* Other classes in SBML take XMLOutputStream objects as arguments, and use
* that to write elements and attributes seamlessly to the XML output stream.
*
* It is also worth noting that unlike XMLInputStream, XMLOutputStream is
* actually independent of the underlying XML parsers. It does not use the
* XML parser libraries at all.
*
* @note The convenience of the XMLInputStream and XMLOutputStream
* abstraction may be useful for developers interested in creating parsers
* for other XML formats besides SBML. It can provide developers with a
* layer above more basic XML parsers, as well as some useful programmatic
* elements such as XMLToken, XMLError, etc.
*
* @see XMLInputStream
*/
/**
* <!-- ~ ~ ~ ~ ~ Start of common documentation strings ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
* The following text is used as common documentation blocks copied multiple
* times elsewhere in this file. The use of @class is a hack needed because
* Doxygen's @copydetails command has limited functionality. Symbols
* beginning with "doc_" are marked as ignored in our Doxygen configuration.
* ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ -->
*
* @class doc_xml_declaration
*
* @par
* The XML declaration has the form
* @verbatim
<?xml version="1.0" encoding="UTF-8"?>
@endverbatim
* Note that the SBML specifications require the use of UTF-8 encoding and
* version 1.0, so for SBML documents, the above is the standard XML
* declaration.
*
* <!-- ------------------------------------------------------------------- -->
* @class doc_programname_arguments
*
* @par
* The functionality associated with the @p programName and @p
* programVersion arguments concerns an optional comment that libSBML can
* write at the beginning of the output stream. The comment is intended
* for human readers of the XML file, and has the following form:
* @verbatim
<!-- Created by <program name> version <program version>
on yyyy-MM-dd HH:mm with libSBML version <libsbml version>. -->
@endverbatim
*
* This program information comment is a separate item from the XML
* declaration that this method can also write to this output stream. The
* comment is also not mandated by any SBML specification. This libSBML
* functionality is provided for the convenience of calling programs, and to
* help humans trace the origin of SBML files.
*
* <!-- ------------------------------------------------------------------- -->
* @class doc_indentation
*
* LibSBML tries to produce human-readable XML output by automatically
* indenting the bodies of elements. Callers can manually control
* indentation further by using the XMLOutputStream::upIndent()
* and XMLOutputStream::downIndent() methods to increase and
* decrease, respectively, the current level of indentation in the
* XML output.
*/
#ifndef XMLOutputStream_h
#define XMLOutputStream_h
#include <sbml/common/sbmlfwd.h>
#ifdef __cplusplus
#include <iostream>
#include <limits>
#include <locale>
#include <string>
#include <time.h>
#include <sbml/common/libsbml-version.h>
#include <sbml/xml/XMLExtern.h>
LIBSBML_CPP_NAMESPACE_BEGIN
class XMLTriple;
class LIBLAX_EXTERN XMLOutputStream
{
public:
/**
* Creates a new XMLOutputStream that wraps the given @p stream.
*
* @copydetails doc_programname_arguments
*
* @copydetails doc_xml_declaration
*
* @param stream the input stream to wrap.
*
* @param encoding the XML encoding to declare in the output. This value
* should be <code>"UTF-8"</code> for SBML documents. The default value
* is <code>"UTF-8"</code> if no value is supplied for this parameter.
*
* @param writeXMLDecl whether to write a standard XML declaration at
* the beginning of the content written on @p stream. The default is
* @c true.
*
* @param programName an optional program name to write as a comment
* in the output stream.
*
* @param programVersion an optional version identification string to write
* as a comment in the output stream.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
XMLOutputStream (std::ostream& stream
, const std::string& encoding = "UTF-8"
, bool writeXMLDecl = true
, const std::string& programName = ""
, const std::string& programVersion = "");
/**
* Destroys this XMLOutputStream.
*/
virtual ~XMLOutputStream();
/**
* Writes the given XML end element name to this XMLOutputStream.
*
* @param name the name of the element.
*
* @param prefix an optional XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.)
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
void endElement (const std::string& name, const std::string& prefix = "");
/**
* Writes the given element to the stream.
*
* @param triple the XML element to write.
*/
void endElement (const XMLTriple& triple);
/**
* Turns automatic indentation on or off for this XMLOutputStream.
*
* @param indent if @c true, automatic indentation is turned on.
*/
void setAutoIndent (bool indent);
/**
* Writes the given XML start element name to this XMLOutputStream.
*
* @param name the name of the element.
*
* @param prefix an optional XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.)
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
void startElement (const std::string& name, const std::string& prefix = "");
/**
* Writes the given XML start element
* <code><em>prefix</em>:<em>name</em></code> on this output stream.
*
* @param triple the start element to write.
*/
void startElement (const XMLTriple& triple);
/**
* Writes the given XML start and end element name to this XMLOutputStream.
*
* @param name the name of the element.
*
* @param prefix an optional XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.)
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
void startEndElement (const std::string& name, const std::string& prefix = "");
/**
* Writes the given start element to this output stream.
*
* @param triple the XML element to write.
*/
void startEndElement (const XMLTriple& triple);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const std::string& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const std::string& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const char* value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const char* value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const char* value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const bool& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string &prefix,
const bool& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const bool& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const double& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const double& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const double& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const long& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const long& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const long& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const int& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const int& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const int& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param name the name of the attribute.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const unsigned int& value);
/**
* Writes the given namespace-prefixed attribute value to this output stream.
*
* @param name the name of the attribute.
*
* @param prefix an XML namespace prefix to write in front of the
* @p element name. (The result has the form
* <code><em>prefix</em>:<em>name</em></code>.) See other versions of
* this method for a variant that does not require a prefix.
*
* @param value the value of the attribute.
*/
void writeAttribute (const std::string& name, const std::string& prefix,
const unsigned int& value);
/**
* Writes the given attribute and value to this output stream.
*
* @param triple the attribute, in the form of an XMLTriple.
*
* @param value the value of the attribute.
*/
void writeAttribute (const XMLTriple& triple, const unsigned int& value);
/**
* Writes a standard XML declaration to this output stream.
*
* @copydetails doc_xml_declaration
*/
void writeXMLDecl ();
/**
* Writes an XML comment with the name and version of this program.
*
* The XML comment has the following form:
* @verbatim
<!-- Created by <program name> version <program version>
on yyyy-MM-dd HH:mm with libSBML version <libsbml version>. -->
@endverbatim
*
* See the class constructor for more information about this program
* comment.
*
* @param programName an optional program name to write as a comment
* in the output stream.
*
* @param programVersion an optional version identification string to write
* as a comment in the output stream.
*
* @param writeTimestamp an optional flag indicating that a timestamp should
* be written
*/
void writeComment (const std::string& programName,
const std::string& programVersion,
bool writeTimestamp = true);
/**
* Writes the given characters to the underlying stream.
*
* @param chars the characters to write
*/
XMLOutputStream& operator<< (const std::string& chars);
/**
* Writes the given double-type number to the underlying stream.
*
* @param value the value to write
*/
XMLOutputStream& operator<< (const double& value);
/**
* Outputs the given long-type number to the underlying stream.
*
* @param value the value to write
*/
XMLOutputStream& operator<< (const long& value);
/**
* Outputs a single character to the underlying stream.
*
* @param c the value to write.
*/
XMLOutputStream& operator<< (const char& c);
/**
* Decreases the indentation level for this XMLOutputStream.
*
* @copydetails doc_indentation
*
* @see upIndent()
*/
void downIndent ();
/**
* Increases the indentation level for this XMLOutputStream.
*
* @copydetails doc_indentation
*
* @see downIndent()
*/
void upIndent ();
/** @cond doxygenLibsbmlInternal */
bool getStringStream();
/** @endcond */
/**
* Returns the SBMLNamespaces object attached to this output stream.
*
* @return the SBMLNamespaces object, or @c NULL if none has been set.
*/
SBMLNamespaces * getSBMLNamespaces();
/**
* Sets the SBMLNamespaces object associated with this output stream.
*
* @param sbmlns the namespace object.
*/
void setSBMLNamespaces(SBMLNamespaces * sbmlns);
/**
* @return a boolean, whether the output stream will write an XML
* comment at the top of the file. (Enabled by default)
*/
static bool getWriteComment();
/**
* sets a flag, whether the output stream will write an XML
* comment at the top of the file. (Enabled by default)
*
* @param writeComment the flag
*/
static void setWriteComment(bool writeComment);
/**
* @return a boolean, whether the output stream will write an XML
* comment with a timestamp at the top of the file. (Enabled by default)
*/
static bool getWriteTimestamp();
/**
* sets a flag, whether the output stream will write an XML
* comment with a timestamp at the top of the file. (Enabled by default)
*
* @param writeTimestamp the flag
*/
static void setWriteTimestamp(bool writeTimestamp);
/**
* @return the name of the library to be used in comments ('libSBML' by default)
*/
static std::string getLibraryName();
/**
* sets the name of the library writing the XML
* @param libraryName the name of the library to be used in comments
*/
static void setLibraryName(const std::string& libraryName);
/**
* @return a string representing the version of the library writing the output.
* This is the value of getLibSBMLDottedVersion() by default.
*/
static std::string getLibraryVersion();
/**
* sets the name of the library writing the output
*
* @param libraryVersion the version information as string
*/
static void setLibraryVersion(const std::string& libraryVersion);
private:
/** @cond doxygenLibsbmlInternal */
/**
* Copy Constructor, made private so as to notify users, that copying an input stream is not supported.
*/
XMLOutputStream (const XMLOutputStream& other);
/**
* Assignment operator, made private so as to notify users, that copying an input stream is not supported.
*/
XMLOutputStream& operator=(const XMLOutputStream& other);
/** @endcond */
protected:
/** @cond doxygenLibsbmlInternal */
/**
* Unitialized XMLOutputStreams may only be created by subclasses.
*/
XMLOutputStream ();
/**
* Outputs the given characters to the underlying stream.
*/
void writeChars (const std::string& name);
/**
* Outputs indentation whitespace.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
void writeIndent (bool isEnd = false);
/**
* Outputs name.
*/
void writeName (const std::string& name, const std::string& prefix = "");
/**
* Outputs prefix:name.
*/
void writeName (const XMLTriple& triple);
/**
* Outputs value in quotes.
*/
void writeValue (const std::string& value);
/**
* Outputs value in quotes.
*/
void writeValue (const char* value);
/**
* Outputs "true" or "false" in quotes.
*/
void writeValue (const bool& value);
/**
* Outputs the double value in quotes, or "INF", "-INF", or "NaN".
*/
void writeValue (const double& value);
/**
* Outputs the long value in quotes.
*/
void writeValue (const long& value);
/**
* Outputs the int value in quotes.
*/
void writeValue (const int& value);
/**
* Outputs the int value in quotes.
*/
void writeValue (const unsigned int& value);
std::ostream& mStream;
std::string mEncoding;
bool mInStart;
bool mDoIndent;
unsigned int mIndent;
bool mInText;
bool mSkipNextIndent;
// this bool value is used to identify if the next character is '&'
// for a character reference or predefined entity.
bool mNextAmpersandIsRef;
SBMLNamespaces* mSBMLns;
// boolean indicating whether the comment on the top of the file is
// written (enabled by default)
static bool mWriteComment;
// boolean indicating whether a timestamp will be generated at the time
// of writing (enabled by default)
static bool mWriteTimestamp;
// the name of the library writing the file (i.e: libSBML)
static std::string mLibraryName;
// the version of the library writing the file
static std::string mLibraryVersion;
/* this is needed for the derived classes used to create the C wrapper */
bool mStringStream;
void setStringStream();
void unsetStringStream();
/** @endcond */
};
/** @cond doxygenLibsbmlInternal */
class LIBLAX_EXTERN XMLOutputStringStream : public XMLOutputStream
{
public:
/**
* Creates a new XMLOutputStream that wraps stream.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
XMLOutputStringStream ( std::ostringstream& stream
, const std::string& encoding = "UTF-8"
, bool writeXMLDecl = true
, const std::string& programName = ""
, const std::string& programVersion = "");
std::ostringstream& getString();
protected:
/** @cond doxygenLibsbmlInternal */
std::ostringstream& mString;
/** @endcond */
};
/** @endcond */
/** @cond doxygenLibsbmlInternal */
class LIBLAX_EXTERN XMLOwningOutputStringStream : public XMLOutputStringStream
{
public:
/**
* Creates a new XMLOutputStream that wraps stream.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
XMLOwningOutputStringStream ( const std::string& encoding = "UTF-8"
, bool writeXMLDecl = true
, const std::string& programName = ""
, const std::string& programVersion = "");
virtual ~XMLOwningOutputStringStream();
};
/** @endcond */
/** @cond doxygenLibsbmlInternal */
class LIBLAX_EXTERN XMLOutputFileStream : public XMLOutputStream
{
public:
/**
* Creates a new XMLOutputStream that wraps stream.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
XMLOutputFileStream ( std::ofstream& stream
, const std::string& encoding = "UTF-8"
, bool writeXMLDecl = true
, const std::string& programName = ""
, const std::string& programVersion = "");
};
/** @endcond */
/** @cond doxygenLibsbmlInternal */
class LIBLAX_EXTERN XMLOwningOutputFileStream : public XMLOutputFileStream
{
public:
/**
* Creates a new XMLOutputStream that wraps stream.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
XMLOwningOutputFileStream (const std::string& filename
, const std::string& encoding = "UTF-8"
, bool writeXMLDecl = true
, const std::string& programName = ""
, const std::string& programVersion = "");
virtual ~XMLOwningOutputFileStream();
};
/** @endcond */
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#ifndef SWIG
LIBSBML_CPP_NAMESPACE_BEGIN
BEGIN_C_DECLS
/**
* Creates a new XMLOutputStream_t that wraps std output stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createAsStdout (const char * encoding, int writeXMLDecl);
/**
* Creates a new XMLOutputStream_t instance for use as a standard output
* stream (<em>stdout</em>).
*
* @copydetails doc_programname_arguments
*
* @copydetails doc_xml_declaration
*
* @param encoding the XML encoding to declare in the output. This value
* should be <code>"UTF-8"</code> for SBML documents. The default value
* is <code>"UTF-8"</code> if no value is supplied for this parameter.
*
* @param writeXMLDecl whether to write a standard XML declaration at
* the beginning of the content written on @p stream. The default is
* @c true.
*
* @param programName an optional program name to write as a comment
* in the output stream.
*
* @param programVersion an optional version identification string to write
* as a comment in the output stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createAsStdoutWithProgramInfo (const char * encoding,
int writeXMLDecl,
const char * programName,
const char * programVersion);
/**
* Creates a new XMLOutputStream_t instance for use as a string
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createAsString (const char * encoding, int writeXMLDecl);
/**
* Creates a new XMLOutputStream_t that wraps std string output stream
* and adds program information as a comment.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createAsStringWithProgramInfo (const char * encoding,
int writeXMLDecl,
const char * programName,
const char * programVersion);
/**
* Creates a new XMLOutputStream_t that wraps std file output stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createFile (const char * filename, const char * encoding, int writeXMLDecl);
/**
* Creates a new XMLOutputStream_t that wraps std file output stream
* and adds program information as a comment.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
XMLOutputStream_t *
XMLOutputStream_createFileWithProgramInfo (const char * filename, const char * encoding,
int writeXMLDecl, const char * programName,
const char * programVersion);
/**
* Deletes this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_free (XMLOutputStream_t *stream);
/**
* Writes the XML declaration:
* <?xml version="1.0" encoding="..."?>
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeXMLDecl (XMLOutputStream_t *stream);
/**
* Increases the indentation level for this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_upIndent(XMLOutputStream_t *stream);
/**
* Decreases the indentation level for this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_downIndent(XMLOutputStream_t *stream);
/**
* Writes the given XML end element name to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_endElement (XMLOutputStream_t *stream, const char* name);
/**
* Writes the given XML end element 'prefix:name' to this
* XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_endElementTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple);
/**
* Turns automatic indentation on or off for this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_setAutoIndent (XMLOutputStream_t *stream, int indent);
/**
* Writes the given XML start element name to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_startElement (XMLOutputStream_t *stream, const char* name);
/**
* Writes the given XML start element 'prefix:name' to this
* XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_startElementTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple);
/**
* Writes the given XML start and end element name to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_startEndElement (XMLOutputStream_t *stream, const char* name);
/**
* Writes the given XML start and end element 'prefix:name' to this
* XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_startEndElementTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple);
/**
* Writes the given attribute, name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeChars (XMLOutputStream_t *stream,
const char* name, const char* chars);
/**
* Writes the given attribute, prefix:name="value" to this
* XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeCharsTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const char* chars);
/**
* Writes the given attribute, name="true" or name="false" to this
* XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeBool (XMLOutputStream_t *stream,
const char* name,
const int flag);
/**
* Writes the given attribute, prefix:name="true" or prefix:name="false"
* to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeBoolTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const int flag);
/**
* Writes the given attribute, name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeDouble (XMLOutputStream_t *stream,
const char* name,
const double value);
/**
* Writes the given attribute, prefix:name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeDoubleTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const double value);
/**
* Writes the given attribute, name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeLong (XMLOutputStream_t *stream,
const char* name,
const long value);
/**
* Writes the given attribute, prefix:name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeLongTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const long value);
/**
* Writes the given attribute, name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeInt (XMLOutputStream_t *stream,
const char* name,
const int value);
/**
* Writes the given attribute, prefix:name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeIntTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const int value);
/**
* Writes the given attribute, name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeUInt (XMLOutputStream_t *stream,
const char* name,
const unsigned int value);
/**
* Writes the given attribute, prefix:name="value" to this XMLOutputStream_t.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeAttributeUIntTriple (XMLOutputStream_t *stream,
const XMLTriple_t *triple,
const unsigned int value);
/**
* Outputs the given characters to the underlying stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeChars (XMLOutputStream_t *stream, const char* chars);
/**
* Outputs the given double to the underlying stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeDouble (XMLOutputStream_t *stream, const double value);
/**
* Outputs the given long to the underlying stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
void
XMLOutputStream_writeLong (XMLOutputStream_t *stream, const long value);
/**
* Returns the given string associated to the underlying string stream.
*
* @memberof XMLTriple_t
*/
LIBLAX_EXTERN
const char *
XMLOutputStream_getString(XMLOutputStream_t* stream);
END_C_DECLS
LIBSBML_CPP_NAMESPACE_END
#endif /* !SWIG */
#endif /* XMLOutputStream_h */
|