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/usr/include/rdkit/RDGeneral/versions.h is in librdkit-dev 201603.5-2.

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// $Id: versions.h 1443 2010-07-01 03:55:11Z glandrum $
//
// Copyright (c) 2010 greg Landrum
//
//   @@ All Rights Reserved  @@
//
namespace RDKit {
  extern const char * rdkitVersion;
  extern const char * boostVersion;
}