/usr/lib/petscdir/3.7.5/x86_64-linux-gnu-real-debug/include/petscdmmoab.h is in libpetsc3.7.5-dbg 3.7.5+dfsg1-4+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 | #if !defined(__PETSCMOAB_H)
#define __PETSCMOAB_H
#include <petscvec.h> /*I "petscvec.h" I*/
#include <petscmat.h> /*I "petscmat.h" I*/
#include <petscdm.h> /*I "petscdm.h" I*/
#include <string>
#include <moab/Core.hpp> /*I "moab/Core.hpp" I*/
#include <moab/ParallelComm.hpp> /*I "moab/ParallelComm.hpp" I*/
/* The MBERR macro is used to save typing. It checks a MOAB error code
* (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can
* also be passed in. */
#define MBERR(msg,rval) do{if(rval != moab::MB_SUCCESS) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,msg);} while(0)
#define MBERRNM(rval) do{if(rval != moab::MB_SUCCESS) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i)",rval);} while(0)
#define MBERRV(mbif,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,emsg.c_str());} } while(0)
#define MBERRVM(mbif,msg,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s :: %s",(PetscErrorCode)rval,msg,emsg.c_str());} } while(0)
/* define enums for options to read and write MOAB files in parallel */
typedef enum {READ_PART,READ_DELETE,BCAST_DELETE} MoabReadMode;
static const char *const MoabReadModes[] = {"READ_PART","READ_DELETE","BCAST_DELETE","MoabReadMode","",0};
typedef enum {WRITE_PART,FORMAT} MoabWriteMode;
static const char *const MoabWriteModes[] = {"WRITE_PART","FORMAT","MoabWriteMode","",0};
PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm comm, DM *moab);
PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm comm, moab::Interface *mbiface, moab::ParallelComm *pcomm, moab::Tag *ltog_tag, moab::Range *range, DM *moab);
PETSC_EXTERN PetscErrorCode DMMoabOutput(DM,const char*,const char*);
PETSC_EXTERN PetscErrorCode DMMoabSetParallelComm(DM dm,moab::ParallelComm *pcomm);
PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM dm,moab::ParallelComm **pcomm);
PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM dm,moab::Interface *iface);
PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM dm,moab::Interface **iface);
PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM dm,moab::Range *range);
PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM dm,moab::Range *local);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM dm,const moab::Range **owned,const moab::Range **ghost);
PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM dm,moab::Range *range);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM dm,const moab::Range **range);
PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM dm,moab::Tag ltogtag);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM dm,moab::Tag *ltog_tag);
PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM dm,PetscInt bs);
PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM dm,PetscInt *bs);
PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM dm,PetscInt *dim);
PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM dm,moab::Range *bdvtx,moab::Range* bdfaces,moab::Range* bdelems);
PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM dm,const moab::EntityHandle ehandle, PetscInt *mat);
PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM dm,PetscInt*,PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM dm,PetscInt*,PetscInt*,PetscInt*,PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM dm,PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag,const moab::Range *range,PetscBool serial, PetscBool destroy_tag,Vec *X);
PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec vec,moab::Tag *tag);
PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec vec,moab::Range *range);
PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec);
PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName);
PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName);
PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM dm,PetscInt nfields,const char* fields[]);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM dm,moab::EntityHandle point, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm,PetscInt** dof);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm,PetscInt** dof);
/* discretization and assembly specific DMMoab interface functions */
PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn,const moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM dm,PetscInt nconn,const moab::EntityHandle *conn,PetscReal *vpos);
PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM dm,const moab::EntityHandle ent,PetscBool* ent_on_boundary);
PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM dm,PetscInt nconn,const moab::EntityHandle *cnt,PetscBool* isbdvtx);
PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM dm,const moab::Range **bdvtx,const moab::Range** bdelems,const moab::Range** bdfaces);
/* DM utility creation interface */
PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm,PetscInt,PetscBool,const PetscReal*,PetscInt,PetscInt,DM*);
PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm,PetscInt,const char*,const char*,DM*);
#endif
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