/usr/include/ngs/itf/ReadItf.h is in libngs-sdk-dev 1.3.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_ngs_itf_readitf_
#define _h_ngs_itf_readitf_
#ifndef _h_ngs_itf_vtable_
#include "VTable.h"
#endif
#ifdef __cplusplus
extern "C" {
#endif
/*--------------------------------------------------------------------------
* NGS_Read_v1
*/
typedef struct NGS_Read_v1 NGS_Read_v1;
struct NGS_Read_v1
{
const NGS_VTable * vt;
};
typedef struct NGS_Read_v1_vt NGS_Read_v1_vt;
struct NGS_Read_v1_vt
{
NGS_VTable dad;
NGS_String_v1 * ( CC * get_id ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
uint32_t ( CC * get_num_frags ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
uint32_t ( CC * get_category ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
NGS_String_v1 * ( CC * get_read_group ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
NGS_String_v1 * ( CC * get_name ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
NGS_String_v1 * ( CC * get_bases ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint64_t offset, uint64_t length );
NGS_String_v1 * ( CC * get_quals ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint64_t offset, uint64_t length );
bool ( CC * next ) ( NGS_Read_v1 * self, NGS_ErrBlock_v1 * err );
/* 1.1 */
bool ( CC * frag_is_aligned ) ( const NGS_Read_v1 * self, NGS_ErrBlock_v1 * err, uint32_t fragIdx );
};
#ifdef __cplusplus
}
#endif
#endif /* _h_ngs_itf_readitf_ */
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