/usr/include/ngs/itf/ReadGroupItf.hpp is in libngs-sdk-dev 1.3.0-2.
This file is owned by root:root, with mode 0o644.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
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* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
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#ifndef _hpp_ngs_itf_read_groupitf_
#define _hpp_ngs_itf_read_groupitf_
#ifndef _hpp_ngs_itf_refcount_
#include <ngs/itf/Refcount.hpp>
#endif
struct NGS_ReadGroup_v1;
namespace ngs
{
/*----------------------------------------------------------------------
* forwards
*/
class ReadItf;
class StringItf;
class StatisticsItf;
/*----------------------------------------------------------------------
* ReadGroupItf
*/
class ReadGroupItf : public Refcount < ReadGroupItf, NGS_ReadGroup_v1 >
{
public:
StringItf * getName () const
throw ( ErrorMsg );
#if READ_GROUP_SUPPORTS_READS
ReadItf * getRead ( const char * readId )
throw ( ErrorMsg );
ReadItf * getReads ( uint32_t categories )
throw ( ErrorMsg );
#endif
StatisticsItf * getStatistics () const
throw ( ErrorMsg );
bool nextReadGroup ()
throw ( ErrorMsg );
};
} // namespace ngs
#endif // _hpp_ngs_itf_read_groupitf_
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