/usr/include/ngs/inl/AlignmentIterator.hpp is in libngs-sdk-dev 1.3.0-2.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 | /*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
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*
* Please cite the author in any work or product based on this material.
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* ===========================================================================
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*/
#ifndef _inl_ngs_alignment_iterator_
#define _inl_ngs_alignment_iterator_
#ifndef _inl_ngs_alignment_
#include <ngs/AlignmentIterator.hpp>
#endif
#ifndef _hpp_ngs_itf_alignmentitf_
#include <ngs/itf/AlignmentItf.hpp>
#endif
namespace ngs
{
// the "self" member is typed as FragmentRef
// but is used here as an AlignmentRef
#define self reinterpret_cast < AlignmentItf * > ( self )
/*----------------------------------------------------------------------
* AlignmentIterator
* iterates across a list of Alignments
*/
inline
bool AlignmentIterator :: nextAlignment ()
throw ( ErrorMsg )
{ return self -> nextAlignment (); }
#undef self
}
#endif // _inl_ngs_alignment_iterator_
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