/usr/include/ngs/ReadGroup.hpp is in libngs-sdk-dev 1.3.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _hpp_ngs_read_group_
#define _hpp_ngs_read_group_
#ifndef _hpp_ngs_read_iterator_
#include <ngs/ReadIterator.hpp>
#endif
#ifndef _hpp_ngs_statistics_
#include <ngs/Statistics.hpp>
#endif
namespace ngs
{
/*----------------------------------------------------------------------
* forwards and typedefs
*/
typedef class ReadGroupItf * ReadGroupRef;
/*======================================================================
* ReadGroup
* represents an NGS-capable object with a group of Reads
*/
class ReadGroup
{
public:
/* getName
* returns the simple name of the read group
*/
String getName () const
throw ( ErrorMsg );
/*------------------------------------------------------------------
* STATISTICS
*/
Statistics getStatistics () const
throw ( ErrorMsg );
public:
// C++ support
ReadGroup & operator = ( ReadGroupRef ref )
throw ();
ReadGroup ( ReadGroupRef ref )
throw ();
ReadGroup & operator = ( const ReadGroup & obj )
throw ();
ReadGroup ( const ReadGroup & obj )
throw ();
~ ReadGroup ()
throw ();
protected:
ReadGroupRef self;
};
} // namespace ngs
// inlines
#ifndef _inl_ngs_read_group_
#include <ngs/inl/ReadGroup.hpp>
#endif
#endif // _hpp_ngs_read_group_
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