This file is indexed.

/usr/include/mia-2.4/mia/core/parallelcxx11.hh is in libmia-2.4-dev 2.4.3-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
/* -*- mia-c++  -*-
 *
 * This file is part of MIA - a toolbox for medical image analysis 
 * Copyright (c) Leipzig, Madrid 1999-2016 Gert Wollny
 *
 * MIA is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef mia_core_parallelcxx11_hh
#define mia_core_parallelcxx11_hh

#include <mia/core/defines.hh>

#include <thread>
#include <atomic>
#include <mutex>
#include <cassert>
#include <vector>

NS_MIA_BEGIN

typedef std::mutex CMutex;
typedef std::recursive_mutex CRecursiveMutex; 


class EXPORT_CORE CMaxTasks {
public:
	static int get_max_tasks(); 
	static void set_max_tasks(int mt); 
private:
	static int max_tasks; 
}; 

#define ATOMIC std::atomic

template <typename Mutex>
class TScopedLock {
public:
	TScopedLock(Mutex& m): m_mutex(m){
		m_mutex.lock();
		own_lock = true; 
	};

	TScopedLock(const TScopedLock<Mutex>& other) = delete;
	TScopedLock& operator = (const TScopedLock<Mutex>& other) = delete;

	~TScopedLock(){
		if (own_lock) 
			m_mutex.unlock();
	};

	void release() {
		if (own_lock) {
			own_lock = false; 
			m_mutex.unlock();
		}
	}
private:
	Mutex& m_mutex;
	bool own_lock;
};

typedef TScopedLock<CMutex> CScopedLock;
typedef TScopedLock<CRecursiveMutex> CRecursiveScopedLock;

class EXPORT_CORE C1DParallelRange {
public: 
	C1DParallelRange(int begin, int end, int block = 1):
		m_begin(begin),
		m_end(end),
		m_block(block), 
		m_current_wp(0)
		{
			assert(begin <= end); 
		}

	C1DParallelRange(const C1DParallelRange& orig):
		m_begin(orig.m_begin),
		m_end(orig.m_end),
		m_block(orig.m_block)
		{
			m_current_wp = orig.m_current_wp.load();
		}
	
	C1DParallelRange get_next_workpackage()	{
		int wp = m_current_wp++;
		int begin = m_begin + wp * m_block;
		int end = begin + m_block;
		if (begin > m_end) {
			return C1DParallelRange(m_end,m_end,0);
		}
		if (end > m_end) {
			return C1DParallelRange(begin, m_end, 1);
		}
		return C1DParallelRange(begin, end, 1);
	}

	bool empty() const {
		return m_begin >= m_end; 
	}

	int begin() const {
		return m_begin; 
	}

	int end() const {
		return m_end; 
	}

private:
	int m_begin;
	int m_end;
	int m_block;
	std::atomic<int> m_current_wp;
}; 

template <typename Range, typename Func>
void pfor_callback(Range& range, Func f)
{
	while (true)  {
		Range wp = range.get_next_workpackage();
		if (!wp.empty()) 
			f(wp);
		else
			break;
	}
}

template <typename Range, typename Func>
void pfor(Range range, Func f) {
	
	int max_treads = CMaxTasks::get_max_tasks(); 
	
	std::thread::hardware_concurrency();

	std::vector<std::thread> threads;
	for (int i = 0; i < max_treads; ++i) {
		threads.push_back(std::thread(pfor_callback<Range, Func>, std::ref(range), f)); 
	}
	
	for (int i = 0; i < max_treads; ++i) {
		threads[i].join(); 
	}
}; 

template <typename V>
class ReduceValue {
public:
	typedef V Value; 
	ReduceValue(const Value& i):identity(i), value(i) {
	}
	
	template <typename Reduce> 
	void reduce(const Value& v, Reduce r)
	{
		CScopedLock sl(mutex);
		value = r(v, value); 
	}
	const Value& get_identity() const {
		return identity;
	}
	const Value& get_reduced() const {
		return value; 
	}
private: 
	mutable CMutex mutex;
	Value identity; 
	Value value; 
}; 

template <typename Range, typename Value, typename Func, typename Reduce>
void preduce_callback(Range& range, ReduceValue<Value>& v, Func f, Reduce r)
{
	Value value = v.get_identity(); 
	while (true)  {
		Range wp = range.get_next_workpackage();
		if (!wp.empty()) 
			value = f(wp, value);
		else
			break;
	}
	v.reduce(value, r);
}

template <typename Range, typename Value, typename Func, typename Reduce>
Value preduce(Range range, Value identity, Func f, Reduce r)
{
	int max_treads = CMaxTasks::get_max_tasks();

	ReduceValue<Value> value(identity); 
		
	std::vector<std::thread> threads;
	for (int i = 0; i < max_treads; ++i) {
		threads.push_back(std::thread(preduce_callback<Range, Value, Func, Reduce>,
					      std::ref(range), std::ref(value), f, r)); 
	}
	
	for (int i = 0; i < max_treads; ++i) {
		threads[i].join(); 
	}
	return value.get_reduced(); 
}; 

NS_MIA_END 

#endif