This file is indexed.

/usr/include/dcmtk/dcmjpeg/djcparam.h is in libdcmtk-dev 3.6.1~20160216-4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
/*
 *
 *  Copyright (C) 1997-2014, OFFIS e.V.
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation were developed by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module:  dcmjpeg
 *
 *  Author:  Norbert Olges, Marco Eichelberg
 *
 *  Purpose: codec parameter class for dcmjpeg codecs
 *
 */

#ifndef DJCPARAM_H
#define DJCPARAM_H

#include "dcmtk/config/osconfig.h"
#include "dcmtk/dcmdata/dccodec.h" /* for DcmCodecParameter */
#include "dcmtk/dcmjpeg/djutils.h" /* for enums */

/** codec parameter for IJG codecs
 */
class DCMTK_DCMJPEG_EXPORT DJCodecParameter: public DcmCodecParameter
{
public:

  /** constructor.
   *  @param pCompressionCSConversion color conversion mode for compression
   *  @param pDecompressionCSConversion color conversion mode for decompression
   *  @param pCreateSOPInstanceUID mode for SOP Instance UID creation
   *  @param pPlanarConfiguration flag describing how planar configuration of
   *    decompressed color images should be handled
   *  @param predictor6WorkaroundEnable enable workaround for buggy lossless compressed images with
   *    overflow in predictor 6 for images with 16 bits/pixel
   *  @param pOptimizeHuffman perform huffman table optimization for 8 bits/pixel compression?
   *  @param pSmoothingFactor smoothing factor for image compression, 0..100
   *  @param pForcedBitDepth forced bit depth for image compression, 0 (auto) or 8/12/16
   *  @param pFragmentSize maximum fragment size (in kbytes) for compression, 0 for unlimited.
   *  @param pCreateOffsetTable create offset table during image compression?
   *  @param pSampleFactors subsampling mode for color image compression
   *  @param pWriteYBR422 flag indicating whether a compressed YBR color stream should
   *    be marked as YBR_FULL or YBR_FULL_422 on DICOM level
   *  @param pConvertToSC flag indicating whether image should be converted to
   *    Secondary Capture upon compression
   *  @param pWindowType mode for VOI transformation of monochrome images
   *  @param pWindowParameter parameter for VOI transform of monochrome images, used in modes 1, 2, 4, 6
   *  @param pVoiCenter VOI window center for mode 5
   *  @param pVoiWidth  VOI window width for mode 5
   *  @param pRoiLeft   Region of Interest left corner for for VOI transform of monochrome images, mode 7
   *  @param pRoiTop    Region of Interest upper corner for for VOI transform of monochrome images, mode 7
   *  @param pRoiWidth  Region of Interest width for for VOI transform of monochrome images, mode 7
   *  @param pRoiHeight Region of Interest height for for VOI transform of monochrome images, mode 7
   *  @param pUsePixelValues check smallest and largest pixel value and optimize compression, mode 0 only
   *  @param pUseModalityRescale create Rescale Slope/Intercept to scale back to original pixel range, mode 0 only
   *  @param pAcceptWrongPaletteTags accept wrong palette attribute tags (only "pseudo lossless" encoder)
   *  @param pAcrNemaCompatibility accept old ACR-NEMA images without photometric interpretation
   *    (only "pseudo" lossless encoder)
   *  @param pTrueLosslessMode Enables true lossless compression (replaces old "pseudo lossless" encoder)
   */
  DJCodecParameter(
    E_CompressionColorSpaceConversion pCompressionCSConversion,
    E_DecompressionColorSpaceConversion pDecompressionCSConversion,
    E_UIDCreation pCreateSOPInstanceUID,
    E_PlanarConfiguration pPlanarConfiguration,
    OFBool predictor6WorkaroundEnable = OFFalse,
    OFBool pOptimizeHuffman = OFFalse,
    int pSmoothingFactor = 0,
    int pForcedBitDepth = 0,
    Uint32 pFragmentSize = 0,
    OFBool pCreateOffsetTable = OFTrue,
    E_SubSampling pSampleFactors = ESS_444,
    OFBool pWriteYBR422 = OFFalse,
    OFBool pConvertToSC = OFFalse,
    size_t pWindowType = 0,
    size_t pWindowParameter = 0,
    double pVoiCenter = 0.0,
    double pVoiWidth = 0.0,
    size_t pRoiLeft = 0,
    size_t pRoiTop = 0,
    size_t pRoiWidth = 0,
    size_t pRoiHeight = 0,
    OFBool pUsePixelValues = OFTrue,
    OFBool pUseModalityRescale = OFFalse,
    OFBool pAcceptWrongPaletteTags = OFFalse,
    OFBool pAcrNemaCompatibility = OFFalse,
    OFBool pTrueLosslessMode = OFTrue);

  /// copy constructor
  DJCodecParameter(const DJCodecParameter& arg);

  /// destructor
  virtual ~DJCodecParameter();

  /** this methods creates a copy of type DcmCodecParameter *
   *  it must be overweritten in every subclass.
   *  @return copy of this object
   */
  virtual DcmCodecParameter *clone() const;

  /** returns the class name as string.
   *  can be used as poor man's RTTI replacement.
   */
  virtual const char *className() const;

  /** returns huffman table optimization flag for 8 bits/pixel compression
   *  @return huffman table optimization flag for 8 bits/pixel compression
   */
  OFBool getOptimizeHuffmanCoding() const
  {
    return optimizeHuffman;
  }

  /** returns smoothing factor for image compression, 0..100
   *  @return smoothing factor for image compression, 0..100
   */
  int getSmoothingFactor() const
  {
    return smoothingFactor;
  }

  /** returns forced bit depth for image compression, 0 (auto) or 8/12/16
   *  @return forced bit depth for image compression
   */
  int getForcedBitDepth() const
  {
    return forcedBitDepth;
  }

  /** returns maximum fragment size (in kbytes) for compression, 0 for unlimited.
   *  @returnmaximum fragment size for compression
   */
  Uint32 getFragmentSize() const
  {
    return fragmentSize;
  }

  /** returns offset table creation flag
   *  @return offset table creation flag
   */
  OFBool getCreateOffsetTable() const
  {
    return createOffsetTable;
  }

  /** returns subsampling mode for color image compression
   *  @return subsampling mode for color image compression
   */
  E_SubSampling getSampleFactors() const
  {
    return sampleFactors;
  }

  /** returns flag indicating whether a compressed YBR color stream should be marked
   *  as YBR_FULL or YBR_FULL_422 on DICOM level
   *  @return YBR422 flag
   */
  OFBool getWriteYBR422() const
  {
    return writeYBR422;
  }

  /** returns secondary capture conversion flag
   *  @return secondary capture conversion flag
   */
  OFBool getConvertToSC() const
  {
    return convertToSC;
  }

  /** returns mode for SOP Instance UID creation
   *  @return mode for SOP Instance UID creation
   */
  E_UIDCreation getUIDCreation() const
  {
    return uidCreation;
  }

  /** returns mode for VOI transformation of monochrome images.
   *  @return mode for VOI transformation of monochrome images
   */
  size_t getWindowType() const
  {
    return windowType;
  }

  /** returns parameter for VOI transform of monochrome images, used in VOI modes 1, 2, 4, 6
   *  @return parameter for VOI transform of monochrome images, used in VOI modes 1, 2, 4, 6
   */
  size_t getWindowParameter() const
  {
    return windowParameter;
  }

  /** returns VOI window center and width for VOI mode 5
   *  @param center VOI center returned in this parameter
   *  @param width VOI width returned in this parameter
   */
  void getVOIWindow(double& center, double& width) const
  {
    center = voiCenter;
    width = voiWidth;
  }

  /** returns ROI coordinates for VOI mode 7
   *  @param left_pos ROI left edge returned in this parameter
   *  @param top_pos ROI top edge returned in this parameter
   *  @param width ROI width returned in this parameter
   *  @param height ROI height returned in this parameter
   */
  void getROI(
    size_t& left_pos,
    size_t& top_pos,
    size_t& width,
    size_t& height) const
  {
    left_pos = roiLeft;
    top_pos = roiTop;
    width = roiWidth;
    height = roiHeight;
  }

  /** returns planar configuration flag
   *  @return planar configuration flag
   */
  E_PlanarConfiguration getPlanarConfiguration() const
  {
    return planarConfiguration;
  }

  /** returns color conversion mode for compression
   *  @return color conversion mode for compression
   */
  E_CompressionColorSpaceConversion getCompressionColorSpaceConversion() const
  {
    return compressionCSConversion;
  }

  /** returns color conversion mode for compression
   *  @return color conversion mode for compression
   */
  E_DecompressionColorSpaceConversion getDecompressionColorSpaceConversion() const
  {
    return decompressionCSConversion;
  }

  /** returns flag indicating if compression to be optimized for real pixel values
   *  @return flag indicating if compression to be optimized for real pixel values
   */
  OFBool getUsePixelValues() const
  {
    return usePixelValues;
  }

  /** returns flag indicating if compression should compute Rescale Slope/Intercept
   *  @return flag indicating if compression should compute Rescale Slope/Intercept
   */
  OFBool getUseModalityRescale() const
  {
    return useModalityRescale;
  }

  /** Returns flag indicating if incorrect palette attribute tags should be accepted
   *  @return flag indicating if incorrect palette attribute tags should be accepted
   */
  OFBool getAcceptWrongPaletteTags() const
  {
    return acceptWrongPaletteTags;
  }

  /** Returns flag indicating if compatibility to old ACR-NEMA images without
   *  photometric interpretation is enabled.
   *  @return flag indicating if ACR-NEMA compatibility is enabled
   */

  OFBool getAcrNemaCompatibility() const
  {
    return acrNemaCompatibility;
  }

  /** returns flag indicating if real lossless mode is enabled
   *  @return flag indicating if real lossless mode is enabled
   */
  OFBool getTrueLosslessMode() const
  {
    return trueLosslessMode;
  }

  /** returns flag indicating whether the workaround for buggy JPEG lossless images with incorrect predictor 6 is enabled
   *  @return flag indicating whether the workaround for buggy JPEG lossless images with incorrect predictor 6 is enabled
   */
  OFBool predictor6WorkaroundEnabled() const
  {
    return predictor6WorkaroundEnabled_;
  }

private:

  /// private undefined copy assignment operator
  DJCodecParameter& operator=(const DJCodecParameter&);

  /// color conversion mode for compression
  E_CompressionColorSpaceConversion compressionCSConversion;

  /// color conversion mode for decompression
  E_DecompressionColorSpaceConversion decompressionCSConversion;

  /// flag describing how planar configuration of decompressed color images should be handled
  E_PlanarConfiguration planarConfiguration;

  /// perform huffman table optimization for 8 bits/pixel compression?
  OFBool optimizeHuffman;

  /// smoothing factor for image compression, 0..100
  int smoothingFactor;

  /// forced bit depth for image compression, 0 (auto) or 8/12/16
  int forcedBitDepth;

  /// maximum fragment size (in kbytes) for compression, 0 for unlimited.
  Uint32 fragmentSize;

  /// create offset table during image compression
  OFBool createOffsetTable;

  /// subsampling mode for color image compression
  E_SubSampling sampleFactors;

  /** flag indicating whether a compressed YBR color stream should be marked
   *  as YBR_FULL or YBR_FULL_422 on DICOM level
   */
  OFBool writeYBR422;

  /// flag indicating whether image should be converted to Secondary Capture upon compression
  OFBool convertToSC;

  /// mode for SOP Instance UID creation
  E_UIDCreation uidCreation;

  /** mode for VOI transformation of monochrome images. possible values:
      0: no VOI transformation (default). See also variables
         usePixelValues (default) or useModalityRescale denoting two
         further variables tweaking compression behaviour.
      1: use the n-th VOI window from the image file (see variable windowType)
      2: use the n-th VOI look up table from the image file (see variable windowType)
      3: compute VOI window using min-max algorithm
      4: compute VOI window using Histogram algorithm, ignoring n percent
      5: compute VOI window using center r and width s
      6: compute VOI window using min-max algorithm ignoring extremes
      7: compute region of interest VOI window
   */
  size_t windowType;

  /// parameter for VOI transform of monochrome images, used in modes 1, 2, 4, 6
  size_t windowParameter;

  /// VOI window center for mode 5
  double voiCenter;

  /// VOI window width for mode 5
  double voiWidth;

  /// Region of Interest left corner for for VOI transform of monochrome images, mode 7
  size_t roiLeft;

  /// Region of Interest upper corner for for VOI transform of monochrome images, mode 7
  size_t roiTop;

  /// Region of Interest width for for VOI transform of monochrome images, mode 7
  size_t roiWidth;

  /// Region of Interest height for for VOI transform of monochrome images, mode 7
  size_t roiHeight;

  /// Check smallest and largest pixel value and optimize compression, mode 0 only
  OFBool usePixelValues;

  /// Create Rescale Slope/Intercept to scale back to original pixel range, mode 0 only
  OFBool useModalityRescale;

  /// Accept wrong palette attribute tags
  OFBool acceptWrongPaletteTags;

  /// Compatibility with old ACR-NEMA images without photometric interpretation
  OFBool acrNemaCompatibility;

  /// True losless mode, replaces old "pseudo" lossless encoders, when true (default)
  OFBool trueLosslessMode;

  /// flag indicating that the workaround for buggy JPEG lossless images with incorrect predictor 6 is enabled
  OFBool predictor6WorkaroundEnabled_;

};


#endif