This file is indexed.

/usr/include/dcmtk/dcmimgle/didocu.h is in libdcmtk-dev 3.6.1~20160216-4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
/*
 *
 *  Copyright (C) 1996-2014, OFFIS e.V.
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation were developed by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module:  dcmimgle
 *
 *  Author:  Joerg Riesmeier
 *
 *  Purpose: DicomDocument (Header)
 *
 */


#ifndef DIDOCU_H
#define DIDOCU_H

#include "dcmtk/config/osconfig.h"

#include "dcmtk/dcmdata/dctypes.h"
#include "dcmtk/dcmdata/dcfilefo.h"
#include "dcmtk/dcmdata/dcxfer.h"
#include "dcmtk/dcmimgle/diobjcou.h"
#include "dcmtk/ofstd/ofstring.h"

#define INCLUDE_CSTDDEF
#include "dcmtk/ofstd/ofstdinc.h"


/*------------------------*
 *  forward declarations  *
 *------------------------*/

class DcmStack;
class DcmObject;
class DcmTagKey;
class DcmElement;
class DcmPixelData;
class DcmSequenceOfItems;


/*---------------------*
 *  class declaration  *
 *---------------------*/

/** Interface class to DICOM data management (dcmdata).
 *  NB: This is an internal class of module dcmimgle/dcmimage.  Please do not
 *      use it for accessing DICOM data structures.  Instead use the classes
 *      and functions provided by dcmdata (e.g. class DcmFileFormat, DcmItem).
 */
class DCMTK_DCMIMGLE_EXPORT DiDocument
  : public DiObjectCounter
{

 public:

    /** constructor, open a DICOM file
     *
     ** @param  filename  the DICOM file
     *  @param  flags     configuration flags (only stored for later use)
     *  @param  fstart    first frame to be processed (only stored for later use)
     *  @param  fcount    number of frames (only stored for later use)
     */
    DiDocument(const char *filename,
               const unsigned long flags = 0,
               const unsigned long fstart = 0,
               const unsigned long fcount = 0);

    /** constructor, use a given DcmObject
     *
     ** @param  object  pointer to DICOM data structures (fileformat, dataset or item)
     *  @param  xfer    transfer syntax of the 'object'.
     *                  (could also be EXS_Unknown in case of fileformat or dataset)
     *  @param  flags   configuration flags (only stored for later use)
     *  @param  fstart  first frame to be processed (only stored for later use)
     *  @param  fcount  number of frames (only stored for later use)
     */
    DiDocument(DcmObject *object,
               const E_TransferSyntax xfer,
               const unsigned long flags = 0,
               const unsigned long fstart = 0,
               const unsigned long fcount = 0);

    /** destructor
     */
    virtual ~DiDocument();

    /** check whether current document is valid
     *
     ** @return status, true if successful, false otherwise
     */
    inline int good() const
    {
        return Object != NULL;
    }

    /** get current DICOM object (dataset)
     *
     ** @return pointer to DICOM object
     */
    inline DcmObject *getDicomObject() const
    {
        return Object;
    }

    /** get current DICOM dataset
     *
     ** @return pointer to DICOM dataset
     */
    inline DcmDataset *getDataset() const
    {
        return OFstatic_cast(DcmDataset *, Object);
    }

    /** get first frame to be processed
     *
     ** @return first frame to be processed
     */
    inline unsigned long getFrameStart() const
    {
        return FrameStart;
    }

    /** get number of frames to be processed
     *
     ** @return number of frames to be processed
     */
    inline unsigned long getFrameCount() const
    {
        return FrameCount;
    }

    /** get configuration flags
     *
     ** @return configuration flags
     */
    inline unsigned long getFlags() const
    {
        return Flags;
    }

    /** get transfer syntax of the DICOM dataset
     *
     ** @return transfer syntax
     */
    inline E_TransferSyntax getTransferSyntax() const
    {
        return Xfer;
    }

    /** get photometric interpretation (color model).
     *  Please note that this is the color model of the decompressed image which might
     *  deviate from the color model of the original compressed image.
     *
     ** @return photometric interpretation of the DICOM object
     */
    inline const char *getPhotometricInterpretation() const
    {
        return PhotometricInterpretation.c_str();
    }

    /** get pixel data object
     *
     ** @return reference to pixel data object (might be NULL)
     */
    inline DcmPixelData *getPixelData() const
    {
        return PixelData;
    }

    /** check whether pixel data only exist in compressed format
     *
     ** @return true if pixel data is compressed, false if an uncompressed version exists
     */
    inline OFBool isCompressed() const
    {
        return DcmXfer(Xfer).isEncapsulated();
    }

    /** search for given tag
     *
     ** @param  tag  tag to search for
     *  @param  obj  element in the dataset where the search should start (default: root)
     *
     ** @return pointer to element if successful, NULL otherwise
     */
    DcmElement *search(const DcmTagKey &tag,
                       DcmObject *obj = NULL) const;

    /** search for given tag and put result(s) on a stack
     *
     ** @param  tag    tag to search for
     *  @param  stack  stack where the result(s) should be stored
     *
     ** @return status, true if successful, false otherwise
     */
    int search(const DcmTagKey &tag,
               DcmStack &stack) const;


    /** get value multiplicity (VM) of given tag
     *
     ** @param  tag  tag to be searched
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getVM(const DcmTagKey &tag) const;

    /** get value of given tag (Uint16)
     *
     ** @param  tag          tag to search for
     *  @param  returnVal    reference to the storage area for the resulting value
     *  @param  pos          position in multi-valued elements (starting with 0)
     *  @param  item         pointer to item in dataset where to start (default: main dataset)
     *  @param  allowSigned  also allow signed value (Sint16) if true
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           Uint16 &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL,
                           const OFBool allowSigned = OFFalse) const;

    /** get value of given tag (Sint16)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           Sint16 &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL) const;

    /** get value of given tag (Uint32)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           Uint32 &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL) const;

    /** get value of given tag (Sint32)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           Sint32 &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL) const;

    /** get value of given tag (double)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           double &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL) const;

    /** get value of given tag (Uint16 array)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM / number of values if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           const Uint16 *&returnVal,
                           DcmItem *item = NULL) const;

    /** get value of given tag (const char *)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           const char *&returnVal,
                           DcmItem *item = NULL) const;

    /** get value of given tag (OFString)
     *
     ** @param  tag        tag to search for
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *  @param  item       pointer to item in dataset where to start (default: main dataset)
     *
     ** @return VM if successful, 0 otherwise
     */
    unsigned long getValue(const DcmTagKey &tag,
                           OFString &returnVal,
                           const unsigned long pos = 0,
                           DcmItem *item = NULL) const;

    /** get sequence of given tag
     *
     ** @param  tag   tag to search for
     *  @param  seq   reference to the storage area for the resulting value
     *  @param  item  pointer to item in dataset where to start (default: main dataset)
     *
     ** @return cardinality if successful, 0 otherwise
     */
    unsigned long getSequence(const DcmTagKey &tag,
                              DcmSequenceOfItems *&seq,
                              DcmItem *item = NULL) const;

  // --- static helper functions ---

    /** get value of given element (Uint16)
     *
     ** @param  elem         element where the value is stored
     *  @param  returnVal    reference to the storage area for the resulting value
     *  @param  pos          position in multi-valued elements (starting with 0)
     *  @param  allowSigned  also allow signed value (Sint16) if true
     *
     ** @return VM if successful, 0 otherwise
     */
    static unsigned long getElemValue(const DcmElement *elem,
                                      Uint16 &returnVal,
                                      const unsigned long pos = 0,
                                      const OFBool allowSigned = OFFalse);

    /** get value of given element (Uint16 array)
     *
     ** @param  elem       element where the value is stored
     *  @param  returnVal  reference to the storage area for the resulting value
     *
     ** @return VM / number of values if successful, 0 otherwise
     */
    static unsigned long getElemValue(const DcmElement *elem,
                                      const Uint16 *&returnVal);

    /** get value of given element (const char *)
     *
     ** @param  elem       element where the value is stored
     *  @param  returnVal  reference to the storage area for the resulting value
     *
     ** @return VM if successful, 0 otherwise
     */
    static unsigned long getElemValue(const DcmElement *elem,
                                      const char *&returnVal);

    /** get value of given element (OFString)
     *
     ** @param  elem       element where the value is stored
     *  @param  returnVal  reference to the storage area for the resulting value
     *  @param  pos        position in multi-valued elements (starting with 0)
     *
     ** @return VM if successful, 0 otherwise
     */
    static unsigned long getElemValue(const DcmElement *elem,
                                      OFString &returnVal,
                                      const unsigned long pos = 0);


 protected:

    /** convert pixel data to uncompressed representation (if required)
     */
    void convertPixelData();


 private:

    /// reference to DICOM dataset (in memory)
    DcmObject *Object;
    /// reference to DICOM fileformat (read from file, maybe NULL)
    DcmFileFormat *FileFormat;
    /// reference to pixel data object
    DcmPixelData *PixelData;
    /// transfer syntax used for reading the dataset
    E_TransferSyntax Xfer;

    /// first frame to be processed
    unsigned long FrameStart;
    /// number of frames to be processed
    unsigned long FrameCount;

    /// configuration flags
    unsigned long Flags;

    /// photometric interpretation (color model)
    OFString PhotometricInterpretation;

 // --- declarations to avoid compiler warnings

    DiDocument(const DiDocument &);
    DiDocument &operator=(const DiDocument &);
};


#endif