/usr/include/bambamc/BamBam_BamFlagBase.h is in libbambamc-dev 0.0.50-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 | /**
bambamc
Copyright (C) 2009-2013 German Tischler
Copyright (C) 2011-2013 Genome Research Limited
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
**/
#if ! defined(BAMBAM_BAMFLAGS)
#define BAMBAM_BAMFLAGS
enum bam_flags
{
BAMBAMC_FPAIRED = (1u << 0),
BAMBAMC_FPROPER_PAIR = (1u << 1),
BAMBAMC_FUNMAP = (1u << 2),
BAMBAMC_FMUNMAP = (1u << 3),
BAMBAMC_FREVERSE = (1u << 4),
BAMBAMC_FMREVERSE = (1u << 5),
BAMBAMC_FREAD1 = (1u << 6),
BAMBAMC_FREAD2 = (1u << 7),
BAMBAMC_FSECONDARY = (1u << 8),
BAMBAMC_FQCFAIL = (1u << 9),
BAMBAMC_FDUP = (1u << 10)
};
enum bambam_cigar_operators
{
BAMBAMC_CMATCH = 0,
BAMBAMC_CINS = 1,
BAMBAMC_CDEL = 2,
BAMBAMC_CREF_SKIP = 3,
BAMBAMC_CSOFT_CLIP = 4,
BAMBAMC_CHARD_CLIP = 5,
BAMBAMC_CPAD = 6,
BAMBAMC_CEQUAL = 7,
BAMBAMC_CDIFF = 8
};
#endif
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