/usr/lib/emboss/include/enssequenceedit.h is in emboss-lib 6.6.0+dfsg-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 | /* @include enssequenceedit ***************************************************
**
** Ensembl Sequence Edit functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.12 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/04 10:30:24 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSSEQUENCEEDIT_H
#define ENSSEQUENCEEDIT_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensattribute.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* @data EnsPSequenceedit *****************************************************
**
** Ensembl Sequence Edit.
**
** @alias EnsSSequenceedit
** @alias EnsOSequenceedit
**
** @cc Bio::EnsEMBL::Attribute
** @attr Attribute [EnsPAttribute] Ensembl Attribute
** @attr Sequence [AjPStr] Alternative sequence
** @attr Start [ajuint] Start coordinate
** @attr End [ajuint] End coordinate
** @attr Use [ajuint] Use counter
** @attr Padding [ajuint] Padding to alignment boundary
** @@
******************************************************************************/
typedef struct EnsSSequenceedit
{
EnsPAttribute Attribute;
AjPStr Sequence;
ajuint Start;
ajuint End;
ajuint Use;
ajuint Padding;
} EnsOSequenceedit;
#define EnsPSequenceedit EnsOSequenceedit*
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Sequence Edit */
EnsPSequenceedit ensSequenceeditNewAttribute(EnsPAttribute attribute);
EnsPSequenceedit ensSequenceeditNewCpy(const EnsPSequenceedit se);
EnsPSequenceedit ensSequenceeditNewIni(EnsPAttributetype at,
AjPStr sequence,
ajuint start,
ajuint end);
EnsPSequenceedit ensSequenceeditNewRef(EnsPSequenceedit se);
void ensSequenceeditDel(EnsPSequenceedit *Pse);
EnsPAttribute ensSequenceeditGetAttribute(const EnsPSequenceedit se);
ajuint ensSequenceeditGetEnd(const EnsPSequenceedit se);
AjPStr ensSequenceeditGetSequence(const EnsPSequenceedit se);
ajuint ensSequenceeditGetStart(const EnsPSequenceedit se);
AjBool ensSequenceeditTrace(const EnsPSequenceedit se, ajuint level);
ajint ensSequenceeditCalculateDifference(const EnsPSequenceedit se);
size_t ensSequenceeditCalculateMemsize(const EnsPSequenceedit se);
AjBool ensSequenceeditApplyString(const EnsPSequenceedit se,
ajint offset,
AjPStr *Psequence);
AjBool ensListSequenceeditSortStartAscending(AjPList ses);
AjBool ensListSequenceeditSortStartDescending(AjPList ses);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSSEQUENCEEDIT_H */
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