/usr/lib/emboss/include/ensregistry.h is in emboss-lib 6.6.0+dfsg-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 | /* @include ensregistry *******************************************************
**
** Ensembl Registry functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.25 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/20 22:14:03 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSREGISTRY_H
#define ENSREGISTRY_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensembl.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Registry */
void ensRegistryClear(void);
void ensRegistryExit(void);
void ensRegistryInit(void);
ajuint ensRegistryLoadDatabaseconnection(EnsPDatabaseconnection dbc);
ajuint ensRegistryLoadServername(AjPStr servername);
AjBool ensRegistryRetrieveAllSpecies(AjPList species);
/* Ensembl Registry Alias */
AjBool ensRegistryAliasAdd(const AjPStr species, const AjPStr alias);
AjBool ensRegistryAliasClear(void);
AjBool ensRegistryAliasFetchAllbySpecies(const AjPStr species,
AjPList aliases);
AjBool ensRegistryAliasLoadFile(const AjPStr filename);
AjBool ensRegistryAliasRemove(const AjPStr alias);
AjBool ensRegistryAliasResolve(const AjPStr alias, AjPStr *Pspecies);
AjBool ensRegistryAliasTrace(ajuint level);
/* Ensembl Registry Entry */
AjBool ensRegistryEntryClear(void);
AjBool ensRegistryEntryTrace(ajuint level);
/* Ensembl Registry Identifier */
AjBool ensRegistryIdentifierClear(void);
AjBool ensRegistryIdentifierLoadFile(const AjPStr filename);
AjBool ensRegistryIdentifierResolve(const AjPStr identifier,
AjPStr *Pspecies,
EnsEDatabaseadaptorGroup *Pdbag);
/* Ensembl Registry Source */
AjBool ensRegistrySourceTrace(ajuint level);
/* Ensembl Registry Database Adaptor */
AjBool ensRegistryAddDatabaseadaptor(EnsPDatabaseadaptor dba);
AjBool ensRegistryAddReferenceadaptor(EnsPDatabaseadaptor dba,
EnsPDatabaseadaptor rsa);
AjBool ensRegistryAddStableidentifierprefix(EnsPDatabaseadaptor dba,
const AjPStr prefix);
EnsPDatabaseadaptor ensRegistryNewDatabaseadaptor(
EnsPDatabaseconnection dbc,
AjPStr database,
AjPStr alias,
EnsEDatabaseadaptorGroup dbag,
AjBool multi,
ajuint identifier);
EnsPDatabaseadaptor ensRegistryNewReferenceadaptor(
EnsPDatabaseadaptor dba,
EnsPDatabaseconnection dbc,
AjPStr database,
AjPStr alias,
EnsEDatabaseadaptorGroup dbag,
AjBool multi,
ajuint identifier);
AjBool ensRegistryRemoveDatabaseadaptor(EnsPDatabaseadaptor *Pdba);
AjBool ensRegistryGetAllDatabaseadaptors(EnsEDatabaseadaptorGroup dbag,
AjPStr alias,
AjPList dbas);
AjPStr ensRegistryGetStableidentifierprefix(EnsPDatabaseadaptor dba);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSREGISTRY_H */
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