/usr/lib/emboss/include/ensgvattribute.h is in emboss-lib 6.6.0+dfsg-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 | /* @include ensgvattribute ****************************************************
**
** Ensembl Genetic Variation Attribute functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.6 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/08/05 10:51:33 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVATTRIBUTE_H
#define ENSGVATTRIBUTE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* @enum EnsEGvattributetypeCode **********************************************
**
** Ensembl Genetic Variation Attribute Type Code enumeration
**
** @value ensEGvattributetypeCodeNULL Null
** @value ensEGvattributetypeCodeSoaccession Sequence Ontology Accession
** @value ensEGvattributetypeCodeSoterm Sequence Ontology Term
** @value ensEGvattributetypeCodeDisplayterm Display Term
** @@
******************************************************************************/
typedef enum EnsOGvattributetypeCode
{
ensEGvattributetypeCodeNULL,
ensEGvattributetypeCodeSoaccession,
ensEGvattributetypeCodeSoterm,
ensEGvattributetypeCodeDisplayterm
} EnsEGvattributetypeCode;
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Attribute */
EnsPGvattribute ensGvattributeNewCpy(const EnsPGvattribute gva);
EnsPGvattribute ensGvattributeNewIni(EnsPGvattributeadaptor gvaa,
ajuint identifier,
EnsPAttributetype at,
AjPStr value);
EnsPGvattribute ensGvattributeNewRef(EnsPGvattribute gva);
void ensGvattributeDel(EnsPGvattribute *Pgva);
EnsPGvattributeadaptor ensGvattributeGetAdaptor(const EnsPGvattribute gva);
EnsPAttributetype ensGvattributeGetAttributetype(const EnsPGvattribute gva);
ajuint ensGvattributeGetIdentifier(const EnsPGvattribute gva);
AjPStr ensGvattributeGetValue(const EnsPGvattribute gva);
AjBool ensGvattributeTrace(const EnsPGvattribute gva, ajuint level);
size_t ensGvattributeCalculateMemsize(const EnsPGvattribute gva);
AjPStr ensGvattributeGetCode(const EnsPGvattribute gva);
AjPStr ensGvattributeGetDescription(const EnsPGvattribute gva);
AjPStr ensGvattributeGetName(const EnsPGvattribute gva);
/* Ensembl Genetic Variation Attribute Adaptor */
EnsPGvattributeadaptor ensRegistryGetGvattributeadaptor(
EnsPDatabaseadaptor dba);
EnsPGvattributeadaptor ensGvattributeadaptorNew(
EnsPDatabaseadaptor dba);
AjBool ensGvattributeadaptorCacheClear(EnsPGvattributeadaptor gvaa);
void ensGvattributeadaptorDel(EnsPGvattributeadaptor *Pgvaa);
EnsPBaseadaptor ensGvattributeadaptorGetBaseadaptor(
EnsPGvattributeadaptor gvaa);
EnsPDatabaseadaptor ensGvattributeadaptorGetDatabaseadaptor(
EnsPGvattributeadaptor gvaa);
AjBool ensGvattributeadaptorFetchAllbyCode(EnsPGvattributeadaptor gvaa,
const AjPStr code,
const AjPStr value,
AjPList gvas);
AjBool ensGvattributeadaptorFetchByIdentifier(EnsPGvattributeadaptor gvaa,
ajuint identifier,
EnsPGvattribute *Pgva);
const EnsPGvattribute ensGvattributeadaptorGetDisplaytermFromsoaccession(
EnsPGvattributeadaptor gvaa,
const AjPStr soaccession);
const EnsPGvattribute ensGvattributeadaptorGetDisplaytermFromsoterm(
EnsPGvattributeadaptor gvaa,
const AjPStr soterm);
const EnsPGvattribute ensGvattributeadaptorGetSoaccessionFromsoterm(
EnsPGvattributeadaptor gvaa,
const AjPStr soterm);
const EnsPGvattribute ensGvattributeadaptorGetSotermFromsoaccession(
EnsPGvattributeadaptor gvaa,
const AjPStr soaccession);
/* Ensembl Genetic Variation Attribute Code */
EnsEGvattributetypeCode ensGvattributetypeCodeFromStr(const AjPStr code);
const char *ensGvattributetypeCodeToChar(EnsEGvattributetypeCode gvatc);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVATTRIBUTE_H */
|