/usr/share/doc/raster3d/examples/example9.script is in raster3d-doc 3.0-3-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | #!/bin/bash
#
# Thermal ellipsoid representations
# GM1-pentasaccharide from a complex with the cholera toxin B-pentamer
# refined with anisotropic displacement parameters at 1.25A resolution
#
# Warning: display -geometry <foo> changed to display -resize <foo>
# in an attempt to hit the ever-moving target of ImageMagick syntax
#
rm -rf setup.angles setup.matrix temp.tmp
#
rods < sugarG.pdb | render | display -resize 50%x50% -geometry +0+0 -title GM1-OS png:- &
sleep 3
#
rastep < sugarG.pdb | render | display -resize 50%x50% -geometry +350+0 -title "50% probability" png:- &
sleep 3
#
rastep -fancy2 -prob 30< sugarG.pdb | render | display -resize 50%x50% -geometry +700+0 -title "fancy2 30% probability" png:- &
sleep 3
#
rastep -fancy3 < sugarG.pdb | render | display -resize 50%x50% -geometry +0+350 -title "fancy3" png:- &
sleep 3
#
rastep -Bcolor 6. 26. < sugarG.pdb | render | display -resize 50%x50% -geometry +350+350 -title "colored by B value" png:- &
sleep 3
#
rastep -fancy6 -Bcolor 6. 26. < sugarG.pdb | render | display -resize 50%x50% -geometry +700+350 -title "fancy6 for ORTEP lovers" png:- &
sleep 3
#
echo ""
echo ""
echo "%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%"
echo ""
echo "In a minute you should have 6 windows in the upper left of your display,"
echo "illustrating different thermal ellipsoid options in the rastep program."
echo ""
echo "%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%"
echo ""
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