/usr/lib/R/site-library/BMS/NEWS is in r-cran-bms 0.3.4-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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Version 0.3.4 (build 2015-11-13)
Maintenance release to fix standard changes regarding S3 and S4 methods in R version 3
Two arguments added to function bms:
* data: function bms is now fully compatible with the formula and data arguments familar from function ' lm'.
see #' attitude' example in help(bms)
* randomizeTimer: for geeks, the call to set.seed can be turned off in order to replicate MCMC runs
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Version 0.3.2 (build 2013-11-17)
Maintenance release to cope with changes in R version 3 compared to version 2
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Version 0.3.1 (build 2012-08-28)
Maintenance release to fix inconsistencies in package version 0.3.0 (Warnings in package checks) under new R versions >=2.14
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Version 0.3.0 (build 2011-05-04)
(changes compared to version 0.2.5)
* USER-VISIBLE CHANGES TO EXISTING FUNCTIONS: ------------------------
* Changed behavior of pmp.bma (see help(pmp.bma))
* NEW FEATURES: ------------------------
* bms now can hold a set of fixed regressors (argument fixed.reg)
* New functions pred.density, plot.pred.density, print.pred.density, predict.bma, predict.zlm
* New functions quantile.density, quantile.pred.density, quantile.coef.density
* New function pmpmodel
* New functions post.var and post.pr2
* New functions model.frame.bma, model.frame.zlm, deviance.bma, deviance.zlm, variable.names.bma, variable.names.zlm, logLik.zlm, vcov.zlm
* bms can now accommodate user-defined coefficient (g) and model-priors, as well as samplers
* BUG FIXES: ------------------------
* bms: + bug with accept.candi = NA fixed
+ problems with environment in non-standard settings fixed (in internal function .construct.arglist)
+ mprior =="custompip" is now working properly (fixed in internal function .mprior.pip.init)
+ fixed problem with sys.call in non-standard calling environments
+
* plotComp: +also works for single bma object now
+ fixed display when variable names are too long
+ fixed many problems with graphical parameters - completely redone
* topmod: + bug when likelihood==-Inf, fixed (in internal function .top10)
+ initializing with bbeta==FALSE now works properly (fixed in .top10)
* density.bma: bug with par and plot.new fixed when argument addons contains "p"
* image.bma: fixed display problems when variable names too long
* plotConv (resp. plot.bma): fixed warning 'In min(x) : no non-missing arguments to min; returning Inf'
* plotModelsize: + bugfixes for parameter ksubset
+ bugfixes for graphical parameters
+ can now cope with case when model prior is not available
* CHANGES TO INTERNAL OBJECTS: ------------------------------
* New classes: gprior, mprior, pred.density, implicit class coef.density
* Streamlining and customizability of gprior required changes to following functions:
bms, zlm, .choose.gprior, gdensity, .topmod.as.bbetaT
New functions gprior.constantg.init, gprior.eblocal.init and .gprior.hyperg.init now provide for generic handling of g-priors
Old functions lprob.*.init are still available for compatibility
* Streamlining and customizability of mprior required changes to following functions:
.choose.mprior, and all .mprior.*.init functions
* Streamlining and customizability of sampling functions led to streamlining of:
.iterenum, .fls.samp, .rev.jump, .enum_startend
* Introduction of bms argument fixed.reg is handled generically by functions
.fixedset.mprior, .fixedset.sampler, .starter, .choose.mprior, bms
* Speeding-up of syntax (replacing $ with [[, directly calling internal functions) yields 5% speed gain in bms vs version 0.2.5
* .construct.arglist has been vastly changed
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Version 0.2.5 (build 2010-07-30)
* NEW FEATURES
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None
* BUG FIXES
---------
* fixed a bug affecting coefficient appearing
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