/usr/lib/R/site-library/SummarizedExperiment/INDEX is in r-bioc-summarizedexperiment 1.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | Assays-class Assays objects
RangedSummarizedExperiment-class
RangedSummarizedExperiment objects
SummarizedExperiment-class
SummarizedExperiment objects
coverage-methods Coverage of a RangedSummarizedExperiment object
findOverlaps-methods Finding overlapping ranges in
RangedSummarizedExperiment objects
inter-range-methods Inter range transformations of a
RangedSummarizedExperiment object
intra-range-methods Intra range transformations of a
RangedSummarizedExperiment object
makeSummarizedExperimentFromDataFrame
Make a RangedSummarizedExperiment from a
data.frame or DataFrame
makeSummarizedExperimentFromExpressionSet
Make a RangedSummarizedExperiment object from
an ExpressionSet and vice-versa
nearest-methods Finding the nearest range neighbor in
RangedSummarizedExperiment objects
readKallisto Input kallisto or kallisto bootstrap results.
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