This file is indexed.

/usr/lib/R/site-library/Gviz/INDEX is in r-bioc-gviz 1.18.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
AlignedReadTrack-class
                        AlignedReadTrack class and methods (NOTE: THIS
                        IS STILL IN DEVELOPMENT AND SUBJECT TO CHANGE)
AlignmentsTrack-class   AlignmentsTrack class and methods
AnnotationTrack-class   AnnotationTrack class and methods
BiomartGeneRegionTrack-class
                        BiomartGeneRegionTrack class and methods
CustomTrack-class       CustomTrack class and methods
DataTrack-class         DataTrack class and methods
DisplayPars-class       DisplayPars class and method
GdObject-class          GdObject class and methods
GeneRegionTrack-class   GeneRegionTrack class and methods
GenomeAxisTrack-class   GenomeAxisTrack class and methods
HighlightTrack-class    HighlightTrack class and methods
IdeogramTrack-class     IdeogramTrack class and methods
ImageMap-class          ImageMap class and methods
NumericTrack-class      NumericTrack class and methods
OverlayTrack-class      OverlayTrack class and methods
RangeTrack-class        RangeTrack class and methods
ReferenceTrack-class    ReferenceTrack class and methods
SequenceTrack-class     SequenceTrack class and methods
StackedTrack-class      StackedTrack class and methods
UcscTrack               Meta-constructor for GenomeGraph tracks fetched
                        directly from the various UCSC data sources.
bmTrack                 Data sets
collapsing              Dynamic content based on the available
                        resolution
exportTracks            Export GenomeGraph tracks to a annotation file
                        representation.
grouping                Grouping of annotation features
plotTracks              The main plotting function for one or several
                        GenomeGraph tracks.
settings                Setting display parameters to control the look
                        and feel of the plots