/usr/lib/R/site-library/GenomeInfoDb/INDEX is in r-bioc-genomeinfodb 1.10.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | GenomeDescription-class
GenomeDescription objects
Seqinfo-class Seqinfo objects
available.species Returns a data.frame that lists the available
species strings and their taxonomy Ids.
fetchExtendedChromInfoFromUCSC
Fetching chromosomes info for some of the UCSC
genomes
mapGenomeBuilds Mapping between UCSC and Ensembl Genome Builds
rankSeqlevels Assign sequence IDs to sequence names
seqinfo Accessing/modifying sequence information
seqlevels-wrappers Convenience wrappers to the seqlevels() getter
and setter
seqlevelsStyle Conveniently rename the seqlevels of an object
according to a given style
speciesMap Species Mapper object and/or list of valid
taxonomy Ids
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